AllenInstitute / scrattch
Single cell RNA-seq analysis for transcriptomic type characterization
☆30Updated this week
Related projects ⓘ
Alternatives and complementary repositories for scrattch
- iterative clustering pipeline of big single cell datasets.☆26Updated last week
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆41Updated 8 months ago
- ☆29Updated last year
- Building Gene Sets and Mapping mFISH Data☆16Updated last year
- Allen Brain Atlas utilities, parsers and data structures☆10Updated 7 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 6 years ago
- ☆47Updated 6 years ago
- ☆24Updated 3 months ago
- ☆45Updated 7 months ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆51Updated this week
- ☆26Updated 2 years ago
- Human cortical cell types☆24Updated 5 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆30Updated 8 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆24Updated 2 months ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 5 years ago
- Individual level Differential Expression Analysis for Single cells☆22Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆45Updated this week
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- ☆9Updated 5 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆24Updated 6 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆54Updated last month
- An R package for handling and analysing imaging mass cytometry data☆21Updated 3 weeks ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆8Updated last year
- CellRank's reproducibility repository.☆14Updated 2 years ago
- Repository for storing prototype functionality implementations for the BKP☆18Updated this week
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Spatial analysis of FISH data☆28Updated 5 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆59Updated 2 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated last month