shmohammadi86 / SCINET

Related projects ⓘ

Alternatives and complementary repositories for SCINET

• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆37Updated 2 months ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆26Updated 4 years ago
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆19Updated last year
• wycwycpku / RSCORE
  ☆25Updated 3 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆34Updated 9 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 8 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆20Updated 2 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆34Updated 2 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆33Updated 3 years ago
• Roy-lab / scMTNI
  ☆21Updated 6 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆23Updated 2 years ago
• zhanglhbioinfor / DIRECT-NET
  ☆10Updated last year
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆18Updated 4 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆36Updated 2 months ago
• viannegao / ChromaFold
  ☆17Updated last month
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆28Updated this week
• vibscc / DALI
  R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  ☆20Updated last year
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆29Updated 2 years ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆73Updated 11 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆17Updated 10 months ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆18Updated 5 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆64Updated 7 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 3 years ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated last year
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆22Updated last year
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆37Updated 2 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆30Updated last year
• pqiu / cooccurrence_clustering
  ☆12Updated 4 years ago