Alternatives and similar repositories for SCINET

Users that are interested in SCINET are comparing it to the libraries listed below

• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆26Updated 5 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 3 weeks ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆35Updated 2 years ago
• wycwycpku / RSCORE
  ☆25Updated 3 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• zhanglhbioinfor / DIRECT-NET
  ☆11Updated 2 years ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆36Updated 2 months ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆39Updated 9 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• sdomanskyi / DigitalCellSorter
  Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
  ☆24Updated 4 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆41Updated 9 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• Pinlyu3 / IReNA-v2
  Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data
  ☆12Updated 3 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆13Updated 7 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• pachterlab / FGP_2024
  ☆14Updated last week
• SchubertLab / mvTCR_reproducibility
  Reproducibility Repo for mvTCR paper
  ☆13Updated last year
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 11 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated 2 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago