Interactive Differential Expression AnaLysis - DE made accessible and reproducible
☆33Dec 1, 2025Updated 8 months ago
Alternatives and similar repositories for ideal
Users that are interested in ideal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17May 15, 2024Updated 2 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Dec 11, 2025Updated 8 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- PIPET 수련생을 위한 실습교육자료입니다. (R, NCA, Rmarkdown, data science, 임상시험, 약동학/약력학, 논문발표 등)☆25May 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- Code for the data processing pipeline☆17Jun 21, 2021Updated 5 years ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jul 13, 2026Updated last month
- exprAnalysis☆15Dec 19, 2016Updated 9 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆168Jun 14, 2026Updated 2 months ago
- ☆11Jun 26, 2020Updated 6 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 3 months ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- CRUK Bioinformatics Workshop September 2017☆18Sep 21, 2017Updated 8 years ago
- Python package used to convert Jupyter Noteboks into Jekyll ready documents including validation and version control tagging☆21May 15, 2018Updated 8 years ago
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 3 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 7 years ago
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Aug 3, 2026Updated last week
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNA-seq workflow: differential transcript usage☆23Aug 20, 2023Updated 2 years ago
- An R package built on RMarkdown to create biosketches (e.g. for NIH)☆22Feb 25, 2022Updated 4 years ago
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 4 months ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 5 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated last year
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆38Jul 24, 2017Updated 9 years ago
- ☆16Jul 9, 2024Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆30Apr 28, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Harvard FAS informatics scRNAseq workshop website☆40Aug 8, 2019Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Jul 17, 2026Updated 3 weeks ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 5 years ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆150Oct 28, 2023Updated 2 years ago
- Cities database and a game!☆17Jan 26, 2020Updated 6 years ago