federicomarini / ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
☆29Updated last month
Related projects ⓘ
Alternatives and complementary repositories for ideal
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 6 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated 11 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated this week
- Functional enrichment analysis of high-throughput omics data☆20Updated 4 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 6 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- Bioconductor package that makes BIG data pint-sized.☆20Updated 9 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Omics Data Analysis Tools☆11Updated this week
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- ☆11Updated 4 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 6 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆42Updated this week
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- ☆13Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- An R package to plot interactive three-way differential expression analysis☆34Updated last year
- Gene-level general linear mixed model☆18Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago