federicomarini / ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
☆29Updated last month
Alternatives and similar repositories for ideal:
Users that are interested in ideal are comparing it to the libraries listed below
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Explore design matrices interactively with R/Shiny☆37Updated last month
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 8 months ago
- Gene-level general linear mixed model☆19Updated last week
- Template for building a bioconductor workshop package using github actions☆19Updated 6 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- ☆11Updated 4 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 8 months ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 3 weeks ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆43Updated 2 months ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated last month
- ☆28Updated 6 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated this week
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- Demonstration of the use of an R package to organize a data analysis project☆21Updated 4 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆34Updated this week
- R interface to megadepth: BigWig and BAM related utilities☆12Updated last month
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 weeks ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆20Updated last week
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago