federicomarini / idealView external linksLinks
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
☆31Dec 1, 2025Updated 2 months ago
Alternatives and similar repositories for ideal
Users that are interested in ideal are comparing it to the libraries listed below
Sorting:
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Dec 11, 2025Updated 2 months ago
- ☆17May 15, 2024Updated last year
- Code for the data processing pipeline☆17Jun 21, 2021Updated 4 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13May 13, 2019Updated 6 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- exprAnalysis☆15Dec 19, 2016Updated 9 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated last week
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆166Oct 2, 2025Updated 4 months ago
- Lab notebook for people who like the command line.☆11Jun 19, 2024Updated last year
- ☆11Sep 5, 2018Updated 7 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Aug 8, 2019Updated 6 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 3 years ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆228Jan 14, 2026Updated 3 weeks ago
- ☆22Nov 11, 2019Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Feb 3, 2026Updated last week
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Oct 31, 2018Updated 7 years ago
- Generate Novel Insights from Gene Correlation Data☆13Jun 27, 2022Updated 3 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- ☆13Feb 29, 2024Updated last year
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Going beyond the t-test in R and introducing linear regression and ANOVA (http://tinyurl.com/linear-models-r)☆34Feb 7, 2023Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29May 28, 2021Updated 4 years ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated last year
- Source code for the GWAS Diversity Monitor☆16Sep 1, 2025Updated 5 months ago
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated last year
- ☆48Mar 1, 2018Updated 7 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Compilation of R heatmap functions.☆14Oct 12, 2021Updated 4 years ago
- A Python library to work with high-throughput sequencing data in the context of data integration☆14May 24, 2017Updated 8 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Sep 25, 2017Updated 8 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Nov 3, 2022Updated 3 years ago
- Python package used to convert Jupyter Noteboks into Jekyll ready documents including validation and version control tagging☆21May 15, 2018Updated 7 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Jan 31, 2026Updated last week