Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
☆15Apr 24, 2023Updated 3 years ago
Alternatives and similar repositories for invivo-imaging
Users that are interested in invivo-imaging are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trend Filter Denoising☆22Jul 30, 2021Updated 5 years ago
- ☆11Feb 27, 2023Updated 3 years ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆108Aug 11, 2025Updated last year
- Compression, denoising and demixing of functional imaging recordings☆30Jul 11, 2018Updated 8 years ago
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bio-FlatScope reconstruction code☆14Mar 21, 2023Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Oct 17, 2023Updated 2 years ago
- Tutorials for learning NWB☆17Oct 3, 2022Updated 3 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Feb 1, 2023Updated 3 years ago
- Mesoscale activity ephys ingest schema☆11Jul 18, 2023Updated 3 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Aug 5, 2026Updated last week
- Source code of SACD(Super-resolution with Auto-Correlation two-step Deconvolution)☆13Dec 12, 2022Updated 3 years ago
- Small Routines for Plasma Physics Education☆10Oct 14, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- HiLo microscopy reconstruction with NLM denoising☆10Jan 28, 2025Updated last year
- ☆15Jun 28, 2022Updated 4 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Aug 10, 2026Updated last week
- Code for Functional Mixed Models for Fiber Photometry☆19Jul 30, 2025Updated last year
- Official imagej plugin of the "SACD" -v1.1.3☆12Feb 8, 2024Updated 2 years ago
- Java (ImageJ/Fiji) software package for 3D deconvolution microscopy☆70Mar 9, 2019Updated 7 years ago
- DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning☆130May 28, 2025Updated last year
- ☆11Oct 9, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Tutorial☆11Jan 25, 2021Updated 5 years ago
- A lock in amplifier running on the RedPitaya's FPGA☆18Jan 29, 2019Updated 7 years ago
- DeepCAD: Deep self-supervised learning for calcium imaging denoising☆127Aug 3, 2023Updated 3 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Jul 8, 2024Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 5 months ago
- ☆29Oct 22, 2025Updated 9 months ago
- 3d face reconstruction using photometric stereo. Estimating light directions using the specular highlight.☆16Mar 8, 2017Updated 9 years ago
- clathrin-mediated endocytosis analysis☆11May 29, 2026Updated 2 months ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3☆101Jan 7, 2026Updated 7 months ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 3 years ago
- Dynamic Signatures Generated by Regulatory Networks☆13Aug 21, 2019Updated 6 years ago
- ELP-Unfolding☆11Nov 29, 2024Updated last year
- Repository for ICE1011, an undergraduate and graduate course on signal analysis for neuroscience☆16Oct 19, 2021Updated 4 years ago
- Hardware documentation for the mesoSPIM microscope project☆35Jun 17, 2026Updated 2 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago