adamcohenlab / invivo-imagingLinks
Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
☆15Updated 2 years ago
Alternatives and similar repositories for invivo-imaging
Users that are interested in invivo-imaging are comparing it to the libraries listed below
Sorting:
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- ☆40Updated 4 years ago
- motion correction☆17Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated 11 months ago
- Serial-section automated anatomy extension for ScanImage☆17Updated 2 months ago
- Control and design of two-photon photostimulation experiments☆17Updated last year
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- ☆17Updated 2 years ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆12Updated 6 years ago
- Single photon tools for Neuroscience☆36Updated last year
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Region Of Interest Classification and Tracking☆26Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 10 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Pre-processing pipeline for widefield data☆12Updated 4 years ago
- Fast, volumetric cell detection. In development.☆20Updated 4 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated 2 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆89Updated 2 months ago