cabooster / DeepCAD
DeepCAD: Deep self-supervised learning for calcium imaging denoising
☆103Updated last year
Related projects ⓘ
Alternatives and complementary repositories for DeepCAD
- DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning☆98Updated last month
- SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising☆68Updated 2 months ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆71Updated 5 months ago
- Three-dimensional residual channel attention networks☆50Updated 2 years ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆27Updated last month
- ☆22Updated last year
- ☆10Updated last year
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆26Updated 3 weeks ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated last year
- This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise re…☆35Updated last year
- Official implementation of Ring Deconvolution Microscopy from https://arxiv.org/abs/2206.08928☆30Updated this week
- Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3☆77Updated 9 months ago
- code of the registration and deconvolution project☆33Updated 3 years ago
- DivNoising is an unsupervised denoising method to generate diverse denoised samples for any noisy input image. This repository contains t…☆42Updated 2 years ago
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)☆27Updated 4 years ago
- Deep denoising pushes the limit of functional data acquisition by recovering high SNR calcium traces from low SNR videos acquired using l…☆10Updated 5 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆61Updated 5 years ago
- ☆53Updated 4 months ago
- ☆41Updated 2 years ago
- Code for StructN2V method and experiments☆23Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Updated last week
- Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"☆55Updated last year
- Codes for 3D Deconvolution of Microscopy Images☆26Updated 6 years ago
- Official Python implementation of the 'Sparse deconvolution'-v0.3.0☆48Updated 9 months ago
- Unsupervised content-preserving transformation for optical microscopy☆22Updated last year
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆38Updated 3 weeks ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated last year
- Matlab routines for online non-rigid motion correction of calcium imaging data☆144Updated 2 years ago
- A deeplearning network based on Richardson-Lucy formula☆41Updated last year
- Untrained, physics-informed neural network for SIM image reconstruction☆29Updated last year