☆10Jan 27, 2025Updated last year
Alternatives and similar repositories for bilaterian_GE
Users that are interested in bilaterian_GE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- ☆26Dec 3, 2025Updated 6 months ago
- conserved non-coding sequence☆17Feb 21, 2022Updated 4 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated 2 weeks ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- ☆21Dec 13, 2024Updated last year
- ☆23Oct 30, 2022Updated 3 years ago
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆29Sep 13, 2023Updated 2 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆35Nov 14, 2024Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 7 months ago
- Species-aware DNA language models capture regulatory elements and their evolution☆29Aug 21, 2023Updated 2 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated last month
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆22Oct 31, 2025Updated 7 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 9 months ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Apr 16, 2026Updated 2 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated 2 weeks ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆45Jun 10, 2026Updated last week
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆38Oct 29, 2025Updated 7 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆28May 20, 2026Updated 3 weeks ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A source code to replicate Sakaue S. et al. Nat Commun. 2020.☆15Oct 29, 2020Updated 5 years ago
- A versatile framework for single-cell transcriptomic data analysis in plants.☆23Mar 11, 2024Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆21Feb 13, 2026Updated 4 months ago
- ☆12Feb 19, 2021Updated 5 years ago
- Multiple sequence alignment of long tandem repeats☆29May 12, 2026Updated last month
- ☆17Jul 29, 2023Updated 2 years ago
- Deep learning the cis-regulatory code for gene expression in selected model plants☆23Mar 15, 2024Updated 2 years ago