☆10Jan 27, 2025Updated last year
Alternatives and similar repositories for bilaterian_GE
Users that are interested in bilaterian_GE are comparing it to the libraries listed below
Sorting:
- The IntroBlocker ancestry inference algorithm☆17Oct 24, 2023Updated 2 years ago
- ☆16Mar 17, 2023Updated 2 years ago
- conserved non-coding sequence☆16Feb 21, 2022Updated 4 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- ☆24Dec 3, 2025Updated 3 months ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆33Nov 14, 2024Updated last year
- ☆21Dec 13, 2024Updated last year
- ☆23Oct 30, 2022Updated 3 years ago
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆28Sep 13, 2023Updated 2 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 3 weeks ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 6 months ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆19Oct 31, 2025Updated 4 months ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- Species-aware DNA language models capture regulatory elements and their evolution☆28Aug 21, 2023Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆42Updated this week
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- ☆16Jul 29, 2023Updated 2 years ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 9 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jan 31, 2026Updated last month
- ☆14Feb 22, 2022Updated 4 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Sep 13, 2024Updated last year
- A source code to replicate Sakaue S. et al. Nat Commun. 2020.☆15Oct 29, 2020Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆35Oct 29, 2025Updated 4 months ago
- PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era☆18Mar 3, 2026Updated last week
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 8 months ago
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆19Apr 23, 2025Updated 10 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Dec 19, 2023Updated 2 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 4 months ago