Alternatives and similar repositories for halLiftover-postprocessing

Users that are interested in halLiftover-postprocessing are comparing it to the libraries listed below

• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆45Updated 5 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 4 months ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 4 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 6 months ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆36Updated 6 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆27Updated 2 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆27Updated 11 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 3 weeks ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 3 months ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 5 years ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆30Updated 2 weeks ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆31Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 6 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆47Updated 3 years ago
• jeanlain / HTvertebrates
  scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species
  ☆11Updated 4 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• baozg / phased-assembly-check
  ☆32Updated last year
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆14Updated 2 years ago
• sudmantlab / amylase_diversity_project
  ☆21Updated last year
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆45Updated last week
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 10 months ago
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆59Updated 5 months ago