Alternatives and similar repositories for Adaptation-to-climate-change-of-alfalfa

Users that are interested in Adaptation-to-climate-change-of-alfalfa are comparing it to the libraries listed below

• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆42Updated last year
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• wen-chen / naughty_monkey
  Some useful gadgets
  ☆10Updated 3 years ago
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆62Updated last year
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆39Updated last week
• Zhanmengtao / bin
  scripts
  ☆19Updated 6 years ago
• jingwanglab / Populus_genomic_prediction_climate_vulnerability
  ☆40Updated 2 years ago
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆32Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆11Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 7 months ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆21Updated last month
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated 2 years ago
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆24Updated 3 weeks ago
• jingwanglab / Populus_superpangenome
  Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …
  ☆16Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆20Updated last year
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆42Updated 2 weeks ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆48Updated last month
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆59Updated last week
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆48Updated last week
• tang-shuyuan / HiMT
  An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads
  ☆11Updated last month
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• jingwanglab / Widespread-linked-selection
  Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.
  ☆11Updated 5 years ago
• dongyawu / PangenomeEvolution
  scripts used in Rice Pangenome Projects (Evolution).
  ☆13Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• simon19891216 / CentIER
  ☆38Updated 2 months ago