PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era
☆18Apr 16, 2026Updated 2 months ago
Alternatives and similar repositories for PhyloAln
Users that are interested in PhyloAln are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated 2 years ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- Automated and parallel pipeline for the Curation of UltraconseRved Elements☆10Jan 16, 2025Updated last year
- ☆10Jan 27, 2025Updated last year
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Jan 9, 2019Updated 7 years ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆14Jul 1, 2026Updated last week
- ☆26Dec 3, 2025Updated 7 months ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆26Jun 26, 2026Updated last week
- BITACORA: A Bioinformatics tool for gene family annotation☆55Dec 10, 2025Updated 6 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆18Dec 19, 2023Updated 2 years ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆16May 14, 2021Updated 5 years ago
- A pipeline for de novo assembly of population-level sequence capture datasets.☆12Nov 6, 2018Updated 7 years ago
- ☆60Jan 16, 2026Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 3 months ago
- Computing resources for peace of mind☆13Feb 23, 2023Updated 3 years ago
- A Python library for generating random phylogenetic trees and related data☆13Jul 4, 2022Updated 4 years ago
- ☆33Jul 9, 2024Updated last year
- ☆15Oct 7, 2025Updated 9 months ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- Quartet-based species tree and tree of blob estimation☆16Feb 10, 2026Updated 4 months ago
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆19Apr 15, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Learning and Aligning Large Protein Families with support of protein language models.☆32Jul 2, 2026Updated last week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- Species-aware DNA language models capture regulatory elements and their evolution☆29Aug 21, 2023Updated 2 years ago
- ☆10Feb 27, 2026Updated 4 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆50May 30, 2026Updated last month
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 2 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Main development repository for SpreadGL☆22Jun 18, 2026Updated 2 weeks ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Parsers (rule-based) for information extraction of traits from plant treatments☆14Aug 15, 2025Updated 10 months ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 8 months ago
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 9 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- 🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.☆25Mar 18, 2025Updated last year