huangyh45 / PhyloAlnLinks
PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era
☆16Updated 3 months ago
Alternatives and similar repositories for PhyloAln
Users that are interested in PhyloAln are comparing it to the libraries listed below
Sorting:
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 2 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆74Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- ☆19Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 3 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year
- paml documentation and tutorials☆62Updated 4 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Bifrost graph gene caller.☆95Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆26Updated 4 years ago
- Ancient microbiome snakemake workflow☆25Updated 5 months ago
- HyPhy standalone analyses☆46Updated last month
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆28Updated last week
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- A Nextflow pipeline for evaluating assembly quality☆37Updated this week
- A program for detection of tRNA genes☆69Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- 🪡Correct and scaffold assemblies using long reads☆55Updated 3 weeks ago
- tree visualization for tree + annotation data☆40Updated 3 months ago