qiangh06 / Setaria-pan-genome
Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- genome studies, as well as demographic and genetic studies of Setaria.
☆23Updated last year
Alternatives and similar repositories for Setaria-pan-genome:
Users that are interested in Setaria-pan-genome are comparing it to the libraries listed below
- Customized codes used in Tibetan wheat sequencing project.☆13Updated 2 years ago
- ☆23Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- ☆14Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆17Updated 7 months ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Scripts for NGS processing☆17Updated 7 years ago
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- The IntroBlocker ancestry inference algorithm☆10Updated last year
- ☆21Updated 2 years ago
- Scripts to convert between file formats for various analyses☆15Updated 5 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆17Updated 3 months ago
- Some useful bioinformatics pipelines for genomics analysis☆14Updated 3 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 9 months ago
- scripts☆15Updated 6 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.☆14Updated 4 years ago
- ☆16Updated 3 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- Yet another Hi-C scaffolding tool☆18Updated 3 months ago
- Whole Genome Annotation Pipeline☆15Updated 10 months ago
- Codes for the lettuce resequencing project in 2020☆28Updated 3 years ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆15Updated 2 years ago
- ☆14Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆37Updated last year
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆17Updated 5 months ago