qiangh06 / Setaria-pan-genomeLinks
Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- genome studies, as well as demographic and genetic studies of Setaria.
☆27Updated 2 years ago
Alternatives and similar repositories for Setaria-pan-genome
Users that are interested in Setaria-pan-genome are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 6 months ago
- ☆16Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- ☆14Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- Customized codes used in Tibetan wheat sequencing project.☆13Updated 3 years ago
- Whole Genome Annotation Pipeline☆16Updated 5 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆25Updated 3 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 5 months ago
- ☆11Updated 3 years ago
- Repository for code used for publications☆29Updated last month
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- repository for code used in analysis of open wild wheat consortium☆18Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 8 months ago
- Scripts to convert between file formats for various analyses☆16Updated 6 months ago
- issues for semina "Data Visulization"☆13Updated 5 months ago
- ☆10Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Full GATK SNP calling pipeline☆22Updated 3 weeks ago
- Some useful bioinformatics pipelines for genomics analysis☆14Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- ☆16Updated 2 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago