qiangh06 / Setaria-pan-genome
Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- genome studies, as well as demographic and genetic studies of Setaria.
☆22Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Setaria-pan-genome
- ☆22Updated last year
- ☆20Updated 3 months ago
- ☆21Updated 2 months ago
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago
- ☆21Updated 2 years ago
- ☆14Updated 2 years ago
- We report a section-wide pan-NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolu…☆11Updated 4 months ago
- ☆14Updated 11 months ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆16Updated 4 months ago
- Scripts that used in our chicken T2T manuscript.☆18Updated last year
- Phylogenetic iDentification of Subgenomes☆10Updated 2 years ago
- ☆16Updated last month
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆15Updated last year
- A long-read SV calling pipeline☆11Updated 3 years ago
- scripts☆15Updated 6 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆21Updated 2 months ago
- Construct and Analyze the North American Vitis pangenome☆21Updated 10 months ago
- ☆28Updated 2 years ago
- Customized codes used in Tibetan wheat sequencing project.☆13Updated 2 years ago
- ☆21Updated 2 years ago
- ☆24Updated 2 years ago
- ☆16Updated 2 years ago
- The tools are used for displaying hic signal of genome☆22Updated 3 years ago
- ☆20Updated last year
- Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.☆9Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 10 months ago
- Main scripts and commands used to analyze goat population genetic and domestication☆16Updated 5 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆18Updated last year