flo-compbio / genometoolsLinks
GenomeTools: Scripts and Classes for Working with Genomic Data
☆12Updated 7 years ago
Alternatives and similar repositories for genometools
Users that are interested in genometools are comparing it to the libraries listed below
Sorting:
- CLI to automate Nextflow pipeline testing☆12Updated last week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Bedfile perturbation tool☆17Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- ☆13Updated 2 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆19Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Interactive eQTL visualizations☆13Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆15Updated last week
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Allele frequency filter app☆14Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- ☆23Updated this week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Mutation rate analysis of autosomal loci☆14Updated 5 years ago