Alternatives and similar repositories for DR_benchmark_initialization

Users that are interested in DR_benchmark_initialization are comparing it to the libraries listed below

• yasinkaymaz / HieRFIT
  Hierarchical Random Forest for Information Transfer
  ☆13Updated 4 years ago
• StantonLabDartmouth / AppScanGEO
  Source code for ScanGEO Shiny App
  ☆15Updated 3 years ago
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆27Updated 2 months ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆32Updated 4 years ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆17Updated 3 years ago
• SigProfilerSuite / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated last week
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆23Updated last week
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆22Updated last year
• PavlidisLab / markerGeneProfile
  Marker gene profile estimation method used in NeuroExpresso manuscript
  ☆14Updated 6 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆18Updated 2 months ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆11Updated 2 years ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆27Updated 3 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆24Updated 4 months ago
• dirmeier / diffusr
  Network diffusion algorithms in R.
  ☆21Updated 2 years ago
• rcannood / princurve
  Fits a Principal Curve in Arbitrary Dimension ⤵
  ☆44Updated last year
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 4 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 7 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• ebecht / DR_benchmark
  ☆15Updated 4 years ago
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆18Updated 3 years ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated 3 weeks ago
• CenterForStatistics-UGent / SPsimSeq
  Semi-parametric simulation of bulk and single cell RNA-seq data
  ☆10Updated last year
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆85Updated last month
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆10Updated 4 years ago
• asalavaty / influential
  Identification and Classification of the Most Influential Nodes
  ☆28Updated last week
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 5 years ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• mararie / lionessR
  Single sample network reconstruction in R
  ☆24Updated 5 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated 2 years ago