Alternatives and similar repositories for DR_benchmark_initialization

Users that are interested in DR_benchmark_initialization are comparing it to the libraries listed below

• stephaniehicks / benchmark-hdf5-clustering
  Benchmarking project for scalable clustering algorithms with large observations and HDF5 files
  ☆8Updated 4 years ago
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆26Updated last year
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆22Updated 8 months ago
• ebecht / DR_benchmark
  ☆15Updated 4 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• timothy-barry / ondisc
  Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
  ☆11Updated last year
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 3 years ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆16Updated 3 years ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆26Updated 2 years ago
• igordot / babelgene
  ☆14Updated 2 years ago
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 4 years ago
• PeteHaitch / DelayedMatrixStats
  A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
  ☆15Updated 3 months ago
• lucylgao / clusterpval
  ☆17Updated 2 years ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• ycli1995 / bbknnR
  Use batch balanced KNN (BBKNN) in R
  ☆11Updated 2 months ago
• Bioconductor / S4Vectors
  Foundation of vector-like and list-like containers in Bioconductor
  ☆18Updated this week
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 3 months ago
• yasinkaymaz / HieRFIT
  Hierarchical Random Forest for Information Transfer
  ☆13Updated 4 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆31Updated 3 years ago
• choisy / cutoff
  R package: determining cutoff values from bimodal data
  ☆11Updated last year
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last month
• asalavaty / influential
  Identification and Classification of the Most Influential Nodes
  ☆29Updated 2 weeks ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated 3 weeks ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• PavlidisLab / markerGeneProfile
  Marker gene profile estimation method used in NeuroExpresso manuscript
  ☆14Updated 6 years ago
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆23Updated last year
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆80Updated last month