linqiaozhi / DR_benchmark_initialization

Related projects ⓘ

Alternatives and complementary repositories for DR_benchmark_initialization

• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 3 months ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆13Updated 2 years ago
• zijianni / scCB2
  R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data
  ☆10Updated last year
• timothy-barry / ondisc
  Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
  ☆11Updated 6 months ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 8 months ago
• stephaniehicks / benchmark-hdf5-clustering
  Benchmarking project for scalable clustering algorithms with large observations and HDF5 files
  ☆8Updated 4 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last week
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆25Updated last year
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆25Updated 8 months ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆11Updated 2 months ago
• architverma1 / tGPLVM
  tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data
  ☆17Updated 5 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆19Updated 3 weeks ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆23Updated last year
• kharchenkolab / vrnmf
  Volume-regularized NMF
  ☆17Updated 2 years ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆14Updated last week
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆18Updated last month
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆15Updated last year
• angy89 / RobustSparseCorrelation
  This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…
  ☆13Updated 5 years ago
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆30Updated 2 years ago
• AllenInstitute / scrattch.vis
  scRNA-seq data visualization from scrattch
  ☆24Updated 6 months ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆29Updated last year
• ZAEDPolSl / MrGSEA
  MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…
  ☆9Updated 2 years ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated last year
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆23Updated last week
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 3 years ago
• StantonLabDartmouth / AppScanGEO
  Source code for ScanGEO Shiny App
  ☆15Updated 2 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆14Updated 5 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago