vanvalenlab / publication-figures
Scripts capable of re-creating figures from Van Valen Lab publications
☆18Updated 2 years ago
Alternatives and similar repositories for publication-figures:
Users that are interested in publication-figures are comparing it to the libraries listed below
- ☆25Updated 3 weeks ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆37Updated 6 months ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆50Updated 4 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆58Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆48Updated 10 months ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆15Updated last year
- ☆12Updated last month
- version 1 scripts for CODA☆41Updated 8 months ago
- ☆11Updated 5 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆23Updated 4 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆24Updated 5 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- ☆26Updated 3 weeks ago
- ☆35Updated 2 years ago
- ☆14Updated 2 years ago
- Scripts for data processing☆40Updated 7 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- ☆33Updated 9 months ago
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- Transfer trained StarDist models across imaging modalities☆1Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆29Updated last year
- ☆14Updated last year
- comseg☆17Updated 2 months ago
- PyTorch implementation of HisToGene☆31Updated 3 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated 2 months ago
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆28Updated 2 months ago
- Deep learning on histopathology images.☆108Updated 3 years ago
- HCC_Deep_learning☆19Updated 4 years ago
- ☆30Updated 3 years ago