vanvalenlab / publication-figuresLinks
Scripts capable of re-creating figures from Van Valen Lab publications
☆18Updated 3 years ago
Alternatives and similar repositories for publication-figures
Users that are interested in publication-figures are comparing it to the libraries listed below
Sorting:
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- ☆16Updated 4 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆57Updated last year
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆30Updated 4 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 4 years ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated last week
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 4 months ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆17Updated last year
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆11Updated last year
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆42Updated 2 months ago
- ☆31Updated 4 years ago
- ☆32Updated 7 months ago
- ☆53Updated 5 months ago
- ☆12Updated 3 months ago
- ☆38Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- A pixel classification based multiplexed image segmentation pipeline☆99Updated last year
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- Transfer trained StarDist models across imaging modalities☆3Updated 10 months ago
- An introduction to deepcell and deep learning☆151Updated 9 months ago
- version 1 scripts for CODA☆50Updated last year
- ☆12Updated 5 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- ☆140Updated 7 months ago
- ☆11Updated 6 months ago
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆20Updated 3 months ago
- ☆11Updated 5 years ago