vanvalenlab / publication-figures
Scripts capable of re-creating figures from Van Valen Lab publications
☆18Updated 2 years ago
Alternatives and similar repositories for publication-figures:
Users that are interested in publication-figures are comparing it to the libraries listed below
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆39Updated 7 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆60Updated last year
- ☆28Updated last week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated 11 months ago
- ☆26Updated last month
- ☆14Updated 2 years ago
- The Single-Cell Pathology Landscape of Breast Cancer☆24Updated 5 years ago
- ☆30Updated last year
- ☆35Updated 2 years ago
- ☆34Updated 10 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆28Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆80Updated 3 months ago
- comseg☆18Updated 2 weeks ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆31Updated 3 weeks ago
- version 1 scripts for CODA☆42Updated 9 months ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆15Updated last year
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆51Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated 3 weeks ago
- A pixel classification based multiplexed image segmentation pipeline☆87Updated last year
- ☆11Updated 5 years ago
- ☆21Updated 2 years ago
- ☆14Updated 2 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆29Updated 3 weeks ago
- ☆48Updated 3 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆70Updated last year
- Transfer trained StarDist models across imaging modalities☆2Updated 5 months ago
- Spatial Single-Cell Analysis Toolkit☆85Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆55Updated 3 months ago