vanvalenlab / publication-figures
Scripts capable of re-creating figures from Van Valen Lab publications
☆18Updated 2 years ago
Alternatives and similar repositories for publication-figures:
Users that are interested in publication-figures are comparing it to the libraries listed below
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆41Updated 8 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆62Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆25Updated 5 years ago
- ☆28Updated 3 months ago
- ☆34Updated 11 months ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 4 years ago
- ☆41Updated last month
- CODEX data processing code☆12Updated 2 months ago
- ☆14Updated 3 years ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆29Updated 2 weeks ago
- Integrated pipeline for multiplexed image analysis☆85Updated last week
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆23Updated last week
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆34Updated last week
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆18Updated last month
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆51Updated last year
- version 1 scripts for CODA☆43Updated 10 months ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆15Updated last year
- A pixel classification based multiplexed image segmentation pipeline☆92Updated last year
- ☆31Updated last year
- ☆21Updated 2 weeks ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 4 months ago
- ☆12Updated 6 months ago
- ☆11Updated 5 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆76Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆72Updated last year
- ☆9Updated last week
- ☆50Updated 3 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆53Updated last year