vanvalenlab / publication-figures
Scripts capable of re-creating figures from Van Valen Lab publications
☆18Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for publication-figures
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆35Updated 3 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆55Updated last year
- ☆25Updated 5 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆48Updated 7 months ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆49Updated 4 years ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆32Updated 2 years ago
- ☆32Updated 2 years ago
- ☆33Updated 7 months ago
- ☆14Updated 2 years ago
- ☆94Updated 3 weeks ago
- ☆11Updated 4 years ago
- ☆12Updated 11 months ago
- Integrated pipeline for multiplexed image analysis☆75Updated this week
- Deep learning on histopathology images.☆95Updated 3 years ago
- A pixel classification based multiplexed image segmentation pipeline☆86Updated 11 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆21Updated 4 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆42Updated 2 years ago
- version 1 scripts for CODA☆37Updated 6 months ago
- An introduction to deepcell and deep learning☆141Updated 2 weeks ago
- ☆61Updated last year
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆74Updated 3 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆67Updated last year
- ☆54Updated 7 months ago
- Multiple-choice microscopy pipeline☆109Updated 3 weeks ago
- Tool to create images and configuration files for Minerva-Story☆15Updated last week
- comseg☆15Updated this week
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆21Updated last month
- Spatial Single-Cell Analysis Toolkit☆74Updated 2 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆51Updated this week