Scripts capable of re-creating figures from Van Valen Lab publications
☆18May 9, 2022Updated 4 years ago
Alternatives and similar repositories for publication-figures
Users that are interested in publication-figures are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An introduction to deepcell and deep learning☆155Oct 21, 2024Updated last year
- ☆21Mar 4, 2024Updated 2 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- Learning notes for DBiT-Notes☆11Nov 28, 2024Updated last year
- ☆19May 5, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 5 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆23Mar 29, 2023Updated 3 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- ☆15Feb 12, 2026Updated 6 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- ☆19May 30, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Jun 11, 2023Updated 3 years ago
- A deep-learning framework for characterizing and visualizing tissue architecture from spatially resolved transcriptomics☆14Sep 13, 2022Updated 3 years ago
- ☆20Apr 8, 2025Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆34May 3, 2021Updated 5 years ago
- Material for the Network Analysis in R workshop☆10Jan 27, 2016Updated 10 years ago
- ☆12Jun 10, 2025Updated last year
- ☆21Dec 23, 2024Updated last year
- Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks☆11Apr 16, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆22Feb 28, 2025Updated last year
- Committee Meeting Reports - LaTeX☆11Jun 11, 2018Updated 8 years ago
- ☆13Aug 1, 2022Updated 4 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Jun 12, 2026Updated 2 months ago
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated 2 years ago
- ☆16May 23, 2022Updated 4 years ago
- Epimap processing and analysis code repository☆33Aug 22, 2022Updated 3 years ago
- ☆17Mar 10, 2026Updated 5 months ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆16Aug 15, 2024Updated 2 years ago
- This repo is for Miccai monuseg challenge, by Jimmy from aetherAI☆17Oct 2, 2018Updated 7 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆24Jan 9, 2026Updated 7 months ago
- Deep Learning Library for Single Cell Analysis☆477Jun 4, 2026Updated 2 months ago