Alternatives and similar repositories for scPip:

Users that are interested in scPip are comparing it to the libraries listed below

• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆42Updated last year
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆31Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated last year
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆21Updated last year
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆28Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆58Updated 4 months ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated last year
• molgenis / scRNA-seq
  ☆18Updated 11 months ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆47Updated last year
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆20Updated 5 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 2 months ago
• UPSUTER / GEMLI
  ☆29Updated 3 weeks ago
• califano-lab / single-cell-pipeline
  ☆44Updated 5 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• Morriseylab / scExtras
  ☆12Updated 7 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆71Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆29Updated 3 years ago
• sjdlabgroup / Census
  Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
  ☆11Updated 3 weeks ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆53Updated 3 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 2 years ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆23Updated 3 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆14Updated last year
• chensujun / scRNA
  ☆30Updated 3 years ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆12Updated 3 years ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 8 months ago
• gxiaolab / scAllele
  ☆31Updated 9 months ago