A pipeline for scRNA-seq data analysis
☆16Mar 26, 2025Updated last year
Alternatives and similar repositories for scPip
Users that are interested in scPip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- R package to do the Ligand Receptor Analysis Visualization☆50Jun 23, 2026Updated last month
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Mar 17, 2019Updated 7 years ago
- ☆38Sep 20, 2022Updated 3 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆17Jan 26, 2026Updated 6 months ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- Implementation for Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated 2 years ago
- ☆18Feb 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- ☆14May 3, 2026Updated 3 months ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 3 years ago
- Microbiome research☆21May 24, 2022Updated 4 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- ☆15Apr 11, 2024Updated 2 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- simpler single cell RNAseq data clustering☆43Feb 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Dec 18, 2023Updated 2 years ago
- ☆22Jan 16, 2026Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- A DSL for layered grammar of interactive graphics in R☆23Apr 30, 2021Updated 5 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆18May 26, 2025Updated last year
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆18Nov 30, 2024Updated last year
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 2 weeks ago
- Scripts for stat and plot figures in rice microbiome paper☆20May 12, 2019Updated 7 years ago
- 宏基 因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10May 14, 2026Updated 2 months ago
- Single-CELL rna-seq analysis software☆39Oct 25, 2017Updated 8 years ago
- A curated list of bioinformatics bench-marking papers and resources.☆15Nov 27, 2019Updated 6 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Jun 1, 2023Updated 3 years ago
- collection of bioinformatics tools and tips, maybe | 生物信息学软件工具、分析tips集合☆16Mar 26, 2021Updated 5 years ago