Alternatives and similar repositories for scPip

Users that are interested in scPip are comparing it to the libraries listed below

• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆42Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 4 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆64Updated 4 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• sjdlabgroup / Census
  Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
  ☆14Updated 7 months ago
• Morriseylab / scExtras
  ☆13Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 2 weeks ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆36Updated 6 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆56Updated 2 years ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆43Updated 5 years ago
• meichendong / SCDC
  SCDC
  ☆45Updated 2 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆35Updated 2 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 6 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆24Updated 2 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆88Updated 2 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆36Updated 4 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• Coolgenome / iTALK
  ☆62Updated 6 years ago
• haniffalab / FCA_liver
  All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).
  ☆39Updated 5 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆32Updated 9 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago