Japrin / scPipLinks
A pipeline for scRNA-seq data analysis
☆14Updated 2 months ago
Alternatives and similar repositories for scPip
Users that are interested in scPip are comparing it to the libraries listed below
Sorting:
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 5 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆38Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- ☆18Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Module 4 for HKU Single-cell Workshop☆12Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- ☆32Updated 5 months ago
- ☆13Updated 11 months ago
- ☆49Updated 10 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- scWGCNA☆61Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Visualize the results of cell-cell communication analysis☆22Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆37Updated 2 years ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- ☆49Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago