Japrin / scPipLinks
A pipeline for scRNA-seq data analysis
☆14Updated 3 months ago
Alternatives and similar repositories for scPip
Users that are interested in scPip are comparing it to the libraries listed below
Sorting:
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆13Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- SCDC☆45Updated 3 weeks ago
- ☆50Updated 5 years ago
- simpler single cell RNAseq data clustering☆40Updated 4 months ago
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆69Updated 9 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆13Updated 5 months ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- A R package for advanced single cell data viz☆67Updated last year
- ☆37Updated 2 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Draw phylogenetic trees of tumor evolution☆80Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- The codes and files for the study of subsolid nodules (SSN).☆14Updated 4 years ago
- scWGCNA☆61Updated 2 years ago