zhouzilu / DENDRO
Genetic Heterogeneity Profiling by Single Cell RNA Sequencing
☆33Updated 4 years ago
Related projects: ⓘ
- ☆36Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆29Updated last week
- A database of useful gene signatures for single-cell analysis☆20Updated 5 months ago
- Clone identification from single-cell data☆57Updated last year
- scWGCNA☆53Updated last year
- Functions for single cell data analysis☆22Updated 3 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆38Updated 2 years ago
- ☆30Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆48Updated 2 years ago
- SCDC☆42Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 6 months ago
- Single cell RNA-seq analysis bundle☆30Updated 5 years ago
- Fast motif matching in R☆41Updated 7 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆73Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆54Updated 4 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆28Updated last year
- ☆29Updated 6 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆41Updated 5 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆19Updated last year
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 weeks ago
- Unified access to several second-generation deconvolution methods☆51Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆64Updated 3 weeks ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated 10 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆26Updated 8 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆36Updated 2 years ago
- ☆25Updated last month