gillislab / MetaNeighbor
A method to rapidly assess cell type identity using both functional and random gene sets
☆36Updated last week
Alternatives and similar repositories for MetaNeighbor:
Users that are interested in MetaNeighbor are comparing it to the libraries listed below
- ☆49Updated 6 years ago
- scWGCNA☆56Updated 2 years ago
- ☆56Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 7 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆92Updated 4 years ago
- ☆59Updated 5 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- ☆37Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆79Updated 5 months ago
- ☆47Updated 2 years ago
- Mouse cell atlas☆60Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 9 months ago
- Clone identification from single-cell data☆60Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆43Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆26Updated 7 months ago
- ☆39Updated 3 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆70Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆96Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆55Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆66Updated 5 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- ☆53Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆67Updated last year