Alternatives and similar repositories for MetaNeighbor:

Users that are interested in MetaNeighbor are comparing it to the libraries listed below

• CFeregrino / scWGCNA
  scWGCNA
  ☆59Updated 2 years ago
• maggiecrow / MetaNeighbor
  ☆50Updated 7 years ago
• Coolgenome / iTALK
  ☆60Updated 5 years ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆50Updated 2 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆43Updated 10 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• lhe17 / nebula
  ☆41Updated last month
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆49Updated last year
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆62Updated last year
• cole-trapnell-lab / cicero-release
  ☆59Updated 8 months ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆73Updated 4 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated 3 weeks ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated 10 months ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆94Updated 5 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆64Updated 6 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 7 months ago
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• data2intelligence / CytoSig
  ☆50Updated 7 months ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆45Updated 4 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated last year
• HYsxe / PRINT
  ☆35Updated 8 months ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆39Updated 2 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆41Updated 2 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 2 weeks ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆36Updated 4 years ago