tk382 / HIPPOLinks
Heterogeneity Induced Pre-Processing tOol
☆18Updated 4 years ago
Alternatives and similar repositories for HIPPO
Users that are interested in HIPPO are comparing it to the libraries listed below
Sorting:
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated last week
- ☆29Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- ☆43Updated 5 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Normalize CITEseq Data☆67Updated 2 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- ☆26Updated 8 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- ☆28Updated 7 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 7 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 6 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- ☆34Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆27Updated 6 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year