tk382 / HIPPOLinks
Heterogeneity Induced Pre-Processing tOol
☆18Updated 4 years ago
Alternatives and similar repositories for HIPPO
Users that are interested in HIPPO are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- ☆29Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆29Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 10 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 6 years ago
- Single-cell Case Control Analysis☆52Updated last week
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- ☆28Updated 7 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- ☆26Updated 8 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- ☆47Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆27Updated 6 years ago