pwwang / vcfstatsLinks
Powerful statistics for VCF files
☆73Updated last month
Alternatives and similar repositories for vcfstats
Users that are interested in vcfstats are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- TIDDIT - structural variant calling☆78Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A collection of command line tools for working with sequencing data☆52Updated last week
- A software for calculating telomere length☆72Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 10 months ago
- My bioinfo toolbox☆50Updated 10 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 4 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- python plotly Circos from VCF☆40Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated last month
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- BigWig and BAM utilities☆99Updated last year
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago