pwwang / vcfstatsLinks
Powerful statistics for VCF files
☆70Updated 2 months ago
Alternatives and similar repositories for vcfstats
Users that are interested in vcfstats are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- A collection of command line tools for working with sequencing data☆51Updated 3 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆78Updated this week
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆102Updated 7 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆46Updated 2 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- BigWig and BAM utilities☆97Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- python plotly Circos from VCF☆39Updated last year
- Drosophila transposable element canonical sequences☆29Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated this week