mobidic / knotAnnotSV
A simple script to create a customizable html file from an AnnotSV output.
☆18Updated last year
Alternatives and similar repositories for knotAnnotSV
Users that are interested in knotAnnotSV are comparing it to the libraries listed below
Sorting:
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 2 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Structural variant merging tool☆49Updated 8 months ago
- ☆22Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆43Updated 3 years ago
- ☆51Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated 2 weeks ago
- ☆22Updated 4 months ago
- WDL workflows for variant calling and assembly using ONT☆34Updated last week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 11 months ago
- ☆39Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated 2 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆17Updated 3 years ago
- A tutorial on structural variant calling for short read sequencing data☆35Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆18Updated last month
- Variant annotation and merging pipeline☆34Updated last month
- ☆22Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- Immuological gene typing and annotation for genome assembly☆36Updated 2 months ago