mobidic / knotAnnotSV
A simple script to create a customizable html file from an AnnotSV output.
☆18Updated 11 months ago
Alternatives and similar repositories for knotAnnotSV:
Users that are interested in knotAnnotSV are comparing it to the libraries listed below
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆51Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- structure detection program☆17Updated 4 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural variant merging tool☆49Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Reconstruction of focal amplifications with long reads☆18Updated this week
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆17Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆21Updated 3 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 9 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆39Updated 6 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- ☆39Updated 11 months ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- Variant annotation and merging pipeline☆32Updated 2 months ago