mobidic / knotAnnotSVLinks
A simple script to create a customizable html file from an AnnotSV output.
☆19Updated last year
Alternatives and similar repositories for knotAnnotSV
Users that are interested in knotAnnotSV are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Structural variant merging tool☆53Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆51Updated 6 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 10 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated this week
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 3 weeks ago
- ☆35Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- ☆81Updated 5 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- ☆29Updated 4 years ago
- Structural variant caller for low-depth long-read sequencing data☆46Updated 2 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- ☆23Updated 4 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- ☆23Updated 8 months ago