A simple script to create a customizable html file from an AnnotSV output.
☆23Apr 20, 2026Updated 6 months ago
Alternatives and similar repositories for knotAnnotSV
Users that are interested in knotAnnotSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python plotly Circos from VCF☆43Jun 20, 2024Updated 2 years ago
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- Annotation and Ranking of Structural Variation☆311Aug 11, 2026Updated 2 months ago
- ☆36Aug 18, 2024Updated 2 years ago
- A customizable genetic variants file format converter.☆11May 22, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 5 months ago
- ☆28Sep 18, 2026Updated last month
- Tandem repeat genotyping from long reads☆28Updated this week
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆76Jun 26, 2023Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- Data and information about the Polaris study☆56Nov 18, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Splicing Prediction Pipeline☆15Aug 12, 2023Updated 3 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Oct 26, 2026Updated last week
- A Tool to Annotate and Prioritize Exome Variants☆268Aug 3, 2026Updated 3 months ago
- Variant Interpretation Pipeline☆52Oct 27, 2026Updated last week
- A suite of tools for detecting expansions of short tandem repeats☆86Jul 6, 2023Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 8 months ago
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- ☆52Jun 25, 2024Updated 2 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Nov 30, 2023Updated 2 years ago
- A command-line interface for Sentieon pipelines☆17Updated this week
- ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)☆10Nov 21, 2025Updated 11 months ago
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- Pan-genome analysis of Chinese (PGC)☆10Jan 9, 2024Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 9 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A fast, robust and accurate variant calling software for human germline DNA analysis☆15Jun 30, 2026Updated 4 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆20Jan 13, 2026Updated 9 months ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago