Alternatives and similar repositories for knotAnnotSV

Users that are interested in knotAnnotSV are comparing it to the libraries listed below

• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 5 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆43Updated 8 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆52Updated 10 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• KolmogorovLab / minda
  ☆19Updated 2 months ago
• GeneDx / scramble
  ☆39Updated last year
• mchowdh200 / samplot-ml
  ☆22Updated 4 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• fakedrtom / SVAFotate
  ☆41Updated 9 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 11 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆36Updated 3 weeks ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated last year
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated 3 weeks ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆21Updated last week
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆40Updated 3 weeks ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 6 months ago
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆32Updated last week
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 3 months ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆17Updated last month