Alternatives and similar repositories for knotAnnotSV

Users that are interested in knotAnnotSV are comparing it to the libraries listed below

• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆52Updated 4 years ago
• KolmogorovLab / minda
  ☆27Updated 9 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆23Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆41Updated 5 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 4 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• MeHelmy / princess
  ☆83Updated 10 months ago
• HipSTR-Tool / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆31Updated 4 years ago
• cytham / nanovar
  Structural variant caller for low-depth long-read sequencing data
  ☆45Updated this week
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆34Updated 3 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆47Updated last year
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆52Updated 10 months ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 10 years ago
• gymrek-lab / TRTools
  Toolkit for genome-wide analysis of tandem repeats
  ☆58Updated 2 months ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆34Updated 10 years ago
• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated last week
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago