UCSC-nanopore-cgl / marginLinks
☆33Updated 3 years ago
Alternatives and similar repositories for margin
Users that are interested in margin are comparing it to the libraries listed below
Sorting:
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- ☆32Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- ☆51Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 4 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year
- A tool to detect structural variant☆17Updated 2 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Updated last month
- VNTR annotation using motif selection☆39Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- Structural variant caller☆55Updated 4 years ago
- ☆23Updated 7 months ago
- Short Tandem Repeat disease loci resource☆24Updated 2 weeks ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago