☆33Nov 6, 2022Updated 3 years ago
Alternatives and similar repositories for margin
Users that are interested in margin are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- GBWT-based handle graph☆31Feb 11, 2026Updated 3 weeks ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆71Updated this week
- A tool for sniffing out the differences in vari-Ants☆38Jan 28, 2026Updated last month
- ☆101Apr 22, 2024Updated last year
- Align subreads to ccs reads☆14Jun 11, 2025Updated 8 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated 2 weeks ago
- Structural variant caller for real-time long-read sequencing data☆61Dec 1, 2022Updated 3 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- ☆51Jun 25, 2024Updated last year
- ☆29Oct 17, 2023Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 3 months ago
- ☆16Jan 5, 2018Updated 8 years ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- ☆38Oct 6, 2025Updated 4 months ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆16Jan 15, 2025Updated last year
- ☆84Mar 3, 2025Updated last year
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 2 months ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- ☆33Aug 18, 2024Updated last year
- ☆13Apr 18, 2022Updated 3 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year