Alternatives and similar repositories for SvAnna

Users that are interested in SvAnna are comparing it to the libraries listed below

• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated last month
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆30Updated 4 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆21Updated 10 months ago
• MeHelmy / princess
  ☆81Updated 5 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 5 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆59Updated this week
• farhangus / Sniffles2_plot
  ☆31Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆40Updated last month
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated 5 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆43Updated 10 months ago
• Nextomics / nextsv
  ☆36Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆53Updated last year
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• WGLab / LongReadSum
  ☆23Updated last month
• llecompte / SVJedi
  SV genotyping with long reads
  ☆39Updated 2 years ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆66Updated 5 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 3 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆38Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• mchowdh200 / samplot-ml
  ☆22Updated 4 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 2 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆44Updated 2 months ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆33Updated last year
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆39Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆29Updated 2 years ago