jbelyeu / PlotCriticLinks
Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gigascience/article/7/7/giy064/5026174
☆13Updated 3 years ago
Alternatives and similar repositories for PlotCritic
Users that are interested in PlotCritic are comparing it to the libraries listed below
Sorting:
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 9 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Short Tandem Repeat disease loci resource☆24Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 9 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 5 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆12Updated 4 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Structural variant (SV) analysis tools☆39Updated last year
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Benchmark structural variant calls against a reference set☆18Updated last month
- ☆12Updated 3 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- Tandem repeat genotyping with long reads☆33Updated 3 months ago
- ☆32Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago