Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gigascience/article/7/7/giy064/5026174
☆14Aug 6, 2022Updated 4 years ago
Alternatives and similar repositories for PlotCritic
Users that are interested in PlotCritic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- material related to the genetech courses☆10Sep 11, 2023Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated last week
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 6 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- ☆15May 22, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆36Aug 18, 2024Updated last year
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Apr 21, 2026Updated 3 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- A secure encryption tool for genomic data☆64May 3, 2026Updated 3 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 2 months ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 6 months ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Jul 1, 2026Updated last month
- Minimizer-based assembly scaffolding and mapping using long reads☆54Apr 1, 2026Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆19May 18, 2026Updated 2 months ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- ☆37Feb 22, 2023Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 7 years ago
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- ☆52Sep 4, 2025Updated 11 months ago