epicrispr-biotechnologies / evolutionary_monte_carlo_search
Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences
☆11Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for evolutionary_monte_carlo_search
- Fast deep learning methods for large-scale protein-protein interaction screening☆24Updated last month
- Active Learning-Assisted Directed Evolution for Protein Engineering☆24Updated 3 weeks ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆61Updated 4 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆23Updated this week
- Predict the structure of immune receptor proteins☆46Updated this week
- ☆18Updated 2 weeks ago
- ☆15Updated 3 months ago
- Ultra-fast in-silico structure mutation☆32Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆25Updated 3 months ago
- Machine learning-driven antibody design☆51Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆12Updated 8 months ago
- An antibody-specific language model focusing on NGL prediction☆12Updated 5 months ago
- An accurate and efficient protein sequence design approach☆20Updated 11 months ago
- ☆43Updated 2 weeks ago
- ☆8Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- An antibody-specific language model focusing on NGL prediction☆20Updated 2 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆23Updated 2 weeks ago
- ☆21Updated this week
- ☆32Updated this week
- ☆21Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 6 months ago
- ☆63Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆34Updated 9 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆13Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆25Updated last month
- ☆28Updated last month
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆18Updated last year