AI4PDLab / ProtRLLinks
☆99Updated last month
Alternatives and similar repositories for ProtRL
Users that are interested in ProtRL are comparing it to the libraries listed below
Sorting:
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 7 months ago
- Official repository of EnzymeFlow☆97Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Updated 4 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Aligning protein generative models with experimental fitness☆116Updated 3 months ago
- Public Release of ProGen3 family of Models☆93Updated 5 months ago
- composite-objective protein design☆133Updated last month
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆72Updated 3 weeks ago
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆157Updated 6 months ago
- ☆72Updated 9 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆131Updated 2 months ago
- ☆114Updated 3 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆109Updated 2 months ago
- Profluent-E1 family of Protein Encoder Models☆98Updated last month
- ☆76Updated 7 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆79Updated 6 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Updated 4 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Updated 7 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated last month
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆80Updated 5 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 4 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆180Updated last month
- Official repository for DiffPepBuilder and DiffPepDock tools☆114Updated 2 months ago
- Code for humanization of antibody and nanobody☆68Updated 4 months ago
- ☆64Updated 2 years ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year