AI4PDLab / ProtRLLinks
☆77Updated 3 weeks ago
Alternatives and similar repositories for ProtRL
Users that are interested in ProtRL are comparing it to the libraries listed below
Sorting:
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆103Updated 2 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆82Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆65Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆64Updated last week
- Official repository of EnzymeFlow☆92Updated 8 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆97Updated 4 months ago
- Aligning protein generative models with experimental fitness☆102Updated 2 months ago
- Public Release of ProGen3 family of Models☆79Updated 2 weeks ago
- multi-objective protein design☆72Updated last week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆60Updated 5 months ago
- ☆70Updated 4 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆27Updated 3 weeks ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆94Updated last week
- Sidechain conditioning and modeling for full-atom protein sequence design☆114Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆62Updated 2 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆55Updated last month
- ☆65Updated last year
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆58Updated 2 weeks ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆47Updated 2 weeks ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 8 months ago
- Structure prediction of alternative protein conformations☆76Updated 5 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆75Updated 2 months ago
- ☆184Updated 2 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆116Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆80Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆87Updated 2 weeks ago