Alternatives and similar repositories for ProtRL

Users that are interested in ProtRL are comparing it to the libraries listed below

• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 7 months ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆120Updated 8 months ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆122Updated 5 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆117Updated 3 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆73Updated last week
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆98Updated 6 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆98Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆70Updated 2 years ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆72Updated 5 months ago
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆102Updated 2 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated 2 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆85Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆74Updated 10 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆106Updated last week
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆41Updated last year
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated this week
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆133Updated 2 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆114Updated 3 months ago
• jproney / AF2Rank
  ☆116Updated 3 years ago
• LeiLiLab / EnzyGen
  ☆39Updated 7 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆111Updated 3 months ago
• WaymentSteeleLab / Dyna-1
  Model for predicting micro-millisecond motions from protein sequence and/or structure
  ☆72Updated 2 months ago
• baker-laboratory / CA_RFDiffusion
  ☆76Updated 8 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆52Updated last month
• MattMcPartlon / AttnPacker
  Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"
  ☆91Updated 2 years ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆47Updated 3 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆127Updated 2 months ago