AI4PDLab / ProtRLLinks
☆60Updated last week
Alternatives and similar repositories for ProtRL
Users that are interested in ProtRL are comparing it to the libraries listed below
Sorting:
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆71Updated this week
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆56Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆35Updated last week
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated last year
- ☆112Updated this week
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆43Updated 6 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆94Updated 10 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆59Updated last month
- ☆67Updated 2 months ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆21Updated 3 weeks ago
- Adapting protein language models for structure-conditioned design☆38Updated 10 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆42Updated 6 months ago
- Metrics for our protein design competitions.☆30Updated 7 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆92Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydra☆34Updated 8 months ago
- ☆35Updated 8 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆48Updated 2 weeks ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆59Updated 2 weeks ago
- Public Release of ProGen3 family of Models☆70Updated last month
- multi-objective protein design☆51Updated this week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 4 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆55Updated 10 months ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 5 months ago
- ☆23Updated 7 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year