ngruver / NOSLinks
Protein Design with Guided Discrete Diffusion
☆132Updated last year
Alternatives and similar repositories for NOS
Users that are interested in NOS are comparing it to the libraries listed below
Sorting:
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆101Updated 9 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated 11 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- ☆65Updated last year
- ☆182Updated last year
- Aligning protein generative models with experimental fitness☆99Updated 2 months ago
- ☆91Updated 9 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆180Updated last year
- Official implementation of "Learning the language of protein structures"☆36Updated 3 weeks ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆63Updated 11 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆127Updated 3 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆106Updated 2 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆90Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆210Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆180Updated last month
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆121Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆83Updated last month
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆127Updated 8 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated 2 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆87Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Pose checks for 3D Structure-based Drug Design methods☆84Updated 8 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆113Updated 4 months ago