ngruver / NOSLinks
Protein Design with Guided Discrete Diffusion
☆134Updated last year
Alternatives and similar repositories for NOS
Users that are interested in NOS are comparing it to the libraries listed below
Sorting:
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆69Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- Aligning protein generative models with experimental fitness☆106Updated last month
- Official implementation of "Learning the language of protein structures"☆39Updated 3 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆65Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- ☆198Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆138Updated 5 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆106Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated 2 years ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆101Updated last year
- ☆93Updated 11 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated 2 years ago
- ☆107Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆180Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆119Updated 7 months ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆95Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆218Updated last year
- diffusion model for protein sequence generation☆50Updated 2 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆211Updated 2 months ago
- composite-objective protein design☆99Updated last week
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆32Updated 2 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆124Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆91Updated 4 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆77Updated 3 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆67Updated 2 months ago