Alternatives and similar repositories for CodonMPNN

Users that are interested in CodonMPNN are comparing it to the libraries listed below

• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 11 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆54Updated 4 months ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆17Updated last month
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆38Updated this week
• PKUliujl / GeoSeqBuilder
  ☆28Updated 8 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆56Updated last month
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆34Updated 2 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆33Updated 9 months ago
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆23Updated 10 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆27Updated last year
• luwei0917 / BindingGYM
  ☆29Updated 2 months ago
• KhondamirRustamov / FoldCraft
  ☆41Updated last month
• Junjie-Zhu / IDPFold
  Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold
  ☆22Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 10 months ago
• A4Bio / FoldToken_open
  ☆22Updated 11 months ago
• zzhangzzhang / pLMs-interpretability
  ☆29Updated 11 months ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆46Updated 10 months ago
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆15Updated 2 weeks ago
• bene837 / af2seq
  ☆44Updated last year
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆53Updated 10 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆54Updated 2 weeks ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 6 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆40Updated last week
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year