☆81Jun 29, 2025Updated 8 months ago
Alternatives and similar repositories for MutateEverything
Users that are interested in MutateEverything are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Mar 30, 2025Updated 11 months ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- ☆23Jul 14, 2023Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆124Feb 7, 2026Updated last month
- ☆116Feb 1, 2026Updated last month
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 2 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 7 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆99Dec 10, 2025Updated 3 months ago
- ☆74Feb 13, 2026Updated last month
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python package to atom map, correct and suggest enzymatic reactions☆43Apr 11, 2024Updated last year
- ☆40Sep 17, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- ☆135Jun 3, 2025Updated 9 months ago
- Scoring methods for predicting the DDG upon protein mutation☆16Feb 20, 2023Updated 3 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated 11 months ago
- Official repository for the ProteinGym benchmarks☆402Jan 12, 2026Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆256Jul 31, 2024Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆129Nov 19, 2025Updated 4 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆49Mar 21, 2024Updated 2 years ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆29Jan 17, 2024Updated 2 years ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- ☆27Feb 10, 2024Updated 2 years ago
- ☆118Dec 7, 2022Updated 3 years ago
- Reaction-Conditioned Virtual Screening of Enzymes☆42Jun 11, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 11 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆315Jul 25, 2025Updated 8 months ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆110Nov 18, 2025Updated 4 months ago
- ☆66Apr 8, 2025Updated 11 months ago