Alternatives and similar repositories for cellar

Users that are interested in cellar are comparing it to the libraries listed below

• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 3 years ago
• wwylab / DeMixT
  ☆36Updated last month
• PoolLab / generecovery
  ☆29Updated 2 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• satijalab / azimuth-references
  ☆25Updated 6 months ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• cellatlas / human
  ☆44Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 2 months ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆57Updated 4 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆43Updated 3 weeks ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• ggjlab / scHCL
  ☆47Updated 5 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• salzman-lab / SICILIAN
  ☆23Updated last year
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated 3 weeks ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆56Updated last year
• lcmmichielsen / scHPL
  ☆37Updated 8 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆26Updated last year
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated last week
• yjzhang / split-seq-pipeline
  ☆22Updated 5 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• satijalab / Mixscale
  ☆21Updated last month
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 7 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago