Interactive software tool for the assignment of cell types in single-cell studies.
☆34Apr 14, 2023Updated 3 years ago
Alternatives and similar repositories for cellar
Users that are interested in cellar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A simple, intuitive and Efficient single cell binary Data Storage format☆16Oct 10, 2019Updated 6 years ago
- ☆19Apr 20, 2025Updated last year
- ☆43Jun 11, 2022Updated 4 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Aug 7, 2023Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆12Apr 19, 2023Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆21Dec 23, 2024Updated last year
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- A model-based downsampling algorithm for single-cell☆10Jan 21, 2023Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 5 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single cell proteomics data processing☆32Apr 6, 2026Updated 2 months ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- ☆55Aug 1, 2024Updated last year
- ☆10Jun 21, 2025Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- Legacy repository for asc_seurat up to v2. For v3+ use github.com/Pereira-Lab-UF/asc_seurat☆24May 18, 2026Updated last month
- Analyzing chromatin accessibility data in R☆19Jun 23, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single cell pipelines☆16Jun 14, 2026Updated 3 weeks ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 6 years ago
- Multi-omic velocity inference☆119Oct 23, 2024Updated last year
- Spatial omics analysis toolbox☆378Jun 2, 2026Updated last month