euxhenh / cellarLinks
Interactive software tool for the assignment of cell types in single-cell studies.
☆34Updated 2 years ago
Alternatives and similar repositories for cellar
Users that are interested in cellar are comparing it to the libraries listed below
Sorting:
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆33Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- ☆36Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- Easy and comprehensive biological network reconstruction and analysis☆31Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- binned motif enrichment analysis and visualisation☆41Updated this week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 2 weeks ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- ☆49Updated last year
- ☆47Updated 6 months ago
- ☆12Updated 3 years ago
- Fast motif matching in R☆46Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 10 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- ☆29Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- ☆39Updated 4 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- ☆24Updated 2 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆12Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago