☆61Jun 17, 2021Updated 4 years ago
Alternatives and similar repositories for AutoGeneS
Users that are interested in AutoGeneS are comparing it to the libraries listed below
Sorting:
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆35Jun 19, 2025Updated 9 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Reference mapping for single-cell genomics☆400Dec 2, 2025Updated 3 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Updated this week
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆306Mar 6, 2023Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- ☆22Jan 6, 2026Updated 2 months ago
- ☆16Feb 11, 2024Updated 2 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆81Dec 4, 2025Updated 3 months ago
- ☆15Feb 5, 2024Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated last month
- ☆10Sep 11, 2020Updated 5 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 2 years ago
- RNA Velocity generalized through dynamical modeling☆494Feb 25, 2026Updated 3 weeks ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 2 years ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆82Jan 22, 2026Updated last month
- Dorothea package in Python☆11Apr 5, 2022Updated 3 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Jun 21, 2024Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Nov 18, 2021Updated 4 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Nov 14, 2022Updated 3 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Mar 10, 2026Updated last week
- Analysis pipeline for the adolescent mouse nervous system project☆24Jun 28, 2018Updated 7 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- ☆96Apr 18, 2024Updated last year
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- scPred package for cell type prediction from scRNA-seq data☆99Jan 18, 2024Updated 2 years ago