supatt-lab / SingCellaRLinks
an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
☆33Updated last year
Alternatives and similar repositories for SingCellaR
Users that are interested in SingCellaR are comparing it to the libraries listed below
Sorting:
- Functions for single cell data analysis☆32Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- ☆48Updated 5 years ago
- ☆41Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆41Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆45Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆36Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- ☆61Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 11 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated last month
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆60Updated 6 months ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- ☆18Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- simpler single cell RNAseq data clustering☆40Updated 3 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- The scripts used for analyzing JAX mouse dataset☆25Updated 7 months ago