supatt-lab / SingCellaRLinks
an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
☆35Updated 2 years ago
Alternatives and similar repositories for SingCellaR
Users that are interested in SingCellaR are comparing it to the libraries listed below
Sorting:
- ☆62Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- ☆50Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆66Updated last year
- A R package for advanced single cell data viz☆68Updated 2 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- ☆41Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- ☆63Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- ☆43Updated 4 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- ☆47Updated 5 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Methods for decontamination of single cell data☆50Updated 8 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated this week
- A portable and fast single cell type identifier☆64Updated 4 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…