Alternatives and similar repositories for SingCellaR

Users that are interested in SingCellaR are comparing it to the libraries listed below

• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆45Updated 2 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆36Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆91Updated 3 weeks ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆21Updated 3 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• Coolgenome / iTALK
  ☆64Updated 6 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 8 months ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆31Updated last month
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 2 months ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆65Updated 4 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆68Updated last year
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 4 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆39Updated 5 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆15Updated 9 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 4 years ago
• PaulingLiu / scibet
  A portable and fast single cell type identifier
  ☆63Updated 4 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆44Updated 3 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• mahmoudibrahim / genesorteR
  Feature Ranking in (possibly large) Clustered Single Cell Data
  ☆40Updated 4 years ago