an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
☆37Aug 7, 2023Updated 2 years ago
Alternatives and similar repositories for SingCellaR
Users that are interested in SingCellaR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- ☆55Aug 1, 2024Updated last year
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated last year
- MASC: Mixed-effects Association testing for Single Cells☆16Apr 16, 2021Updated 5 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆120Updated this week
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 3 months ago
- Accurate and fast cell marker gene identification with COSG☆64Feb 8, 2026Updated 3 months ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Metacell - Single-cell mRNA Analysis☆121Mar 16, 2026Updated 2 months ago
- ☆20May 30, 2022Updated 3 years ago
- ☆39Aug 4, 2021Updated 4 years ago
- R package for analysing single cell data☆64Dec 8, 2022Updated 3 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆79Mar 1, 2026Updated 2 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆46Apr 12, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- ☆299Nov 10, 2024Updated last year
- ☆12Mar 22, 2024Updated 2 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- ☆66Aug 2, 2019Updated 6 years ago
- ☆56Nov 28, 2025Updated 5 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆11May 25, 2025Updated last year
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 8 months ago
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆14Jul 10, 2024Updated last year
- Shiny app for the analysis of single cell data☆26Apr 18, 2026Updated last month
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago