maxwellsh / DIGDriverLinks
Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
☆26Updated 2 years ago
Alternatives and similar repositories for DIGDriver
Users that are interested in DIGDriver are comparing it to the libraries listed below
Sorting:
- University of Cambridge PhD thesis☆15Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆18Updated 4 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated 3 weeks ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Perturb-seq analysis package☆14Updated last year
- ☆39Updated 9 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Multi-Omics Peptide Generator☆18Updated this week
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- ☆18Updated 2 months ago
- ☆17Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Differential Mutation Analysis☆11Updated 5 years ago
- JEME method for predicting enhancer targets☆11Updated 7 years ago
- scover☆23Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- BAGEL software☆27Updated last year
- Mean Alterations Using Discrete Expression☆14Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated 5 months ago
- ☆48Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Updated 7 years ago
- Builds a PEP from SRA or GEO accessions☆50Updated 9 months ago