maxwellsh / DIGDriverLinks
Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
☆26Updated 3 years ago
Alternatives and similar repositories for DIGDriver
Users that are interested in DIGDriver are comparing it to the libraries listed below
Sorting:
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Perturb-seq analysis package☆14Updated last year
- BPNet manuscript code.☆12Updated 4 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Updated 4 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 9 months ago
- ☆39Updated 3 months ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- ☆18Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆20Updated 8 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last month
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- ☆18Updated 6 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Network Visualization using both GUI and Programming☆29Updated 5 months ago