Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
☆27Jul 30, 2022Updated 3 years ago
Alternatives and similar repositories for DIGDriver
Users that are interested in DIGDriver are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Jul 8, 2026Updated 2 weeks ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 9 years ago
- ☆10Jun 21, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Sep 2, 2024Updated last year
- R package☆22Dec 16, 2023Updated 2 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Apr 11, 2026Updated 3 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 5 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- ☆12Jan 31, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15May 11, 2018Updated 8 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆123Updated this week
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆48Apr 16, 2021Updated 5 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated last month
- ☆11Aug 3, 2023Updated 2 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆21Apr 20, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆22Jul 1, 2026Updated 3 weeks ago
- ☆16Aug 11, 2025Updated 11 months ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Simulation of rare and common variants based on 1000 genomes data☆19Sep 24, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated last year
- SNV calling from single cell sequencing☆120Nov 11, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 2 months ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆12Dec 5, 2023Updated 2 years ago
- ☆80Jul 12, 2023Updated 3 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- ☆12Sep 22, 2025Updated 10 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆15Jul 24, 2025Updated last year