KirstLab / asc_seuratLinks
☆24Updated last year
Alternatives and similar repositories for asc_seurat
Users that are interested in asc_seurat are comparing it to the libraries listed below
Sorting:
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated 11 months ago
- ☆44Updated 10 months ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆31Updated last month
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Explore and download data from the recount3 project☆36Updated 3 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 4 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- ☆36Updated last year
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- Easy and comprehensive biological network reconstruction and analysis☆31Updated 10 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆34Updated last week
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 8 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- RNA velocity validation☆22Updated 3 years ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆32Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Visual exploratory analysis of gene expression data☆44Updated 3 months ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆15Updated this week
- ☆29Updated 2 years ago
- ☆22Updated last year
- Using BCR and expression for sequence embedding☆25Updated last week
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆19Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 2 months ago