Alternatives and similar repositories for ExOrthist

Users that are interested in ExOrthist are comparing it to the libraries listed below

• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆30Updated 2 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆29Updated last week
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆43Updated 3 months ago
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆14Updated 3 years ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆17Updated 3 months ago
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆23Updated 2 years ago
• ma-compbio / Phylo-HMRF
  ☆17Updated 4 years ago
• xunchen85 / ERVcaller
  ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…
  ☆13Updated last year
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated 10 months ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆27Updated 6 years ago
• srbehera / DRAGEN_Analysis
  ☆35Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 6 months ago
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆24Updated 2 months ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago