biocorecrg / ExOrthistView external linksLinks
ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
☆25Dec 5, 2024Updated last year
Alternatives and similar repositories for ExOrthist
Users that are interested in ExOrthist are comparing it to the libraries listed below
Sorting:
- conserved non-coding sequence☆16Feb 21, 2022Updated 3 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- ☆15Aug 1, 2021Updated 4 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- my commonly used perl script☆19Aug 28, 2020Updated 5 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Aug 31, 2024Updated last year
- ☆10May 31, 2022Updated 3 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 8 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Jan 16, 2025Updated last year
- plot genome alignment synteny☆21May 25, 2020Updated 5 years ago
- Splits fastq files evenly☆23Aug 19, 2020Updated 5 years ago
- Identification of conserved non-coding sequences in plants☆32Feb 4, 2026Updated last week
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- circos pipeline☆20May 8, 2021Updated 4 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- Newick tree processing☆13Updated this week
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 4 years ago
- ☆13Apr 22, 2021Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- splicing and feature maps for RBPs☆25Apr 19, 2022Updated 3 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Feb 22, 2019Updated 6 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago