Alternatives and similar repositories for ExOrthist

Users that are interested in ExOrthist are comparing it to the libraries listed below

• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 5 months ago
• xunchen85 / ERVcaller
  ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…
  ☆13Updated last year
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• mortazavilab / cerberus
  ☆20Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 5 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆31Updated 3 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆16Updated 6 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆24Updated 2 years ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 8 months ago
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆24Updated 2 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• FemeniasM / ExplorATEproject
  R package to explore active transposable elements with RNA-seq data
  ☆21Updated 3 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• malonge / CallSV
  A long-read SV calling pipeline
  ☆12Updated 4 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• baoxingsong / dCNS
  conserved non-coding sequence
  ☆16Updated 3 years ago
• ma-compbio / Phylo-HMRF
  ☆17Updated 5 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated last year
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 2 months ago
• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆30Updated 8 years ago