Gabaldonlab / haplotypo
This is the Haplotypo repository
☆20Updated 9 months ago
Alternatives and similar repositories for haplotypo:
Users that are interested in haplotypo are comparing it to the libraries listed below
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Convert HAL to VG☆22Updated 7 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- ☆10Updated 10 years ago
- ☆20Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 6 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago