Gabaldonlab / haplotypoLinks
This is the Haplotypo repository
☆20Updated last year
Alternatives and similar repositories for haplotypo
Users that are interested in haplotypo are comparing it to the libraries listed below
Sorting:
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- ☆11Updated 10 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- ☆15Updated 7 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- ☆15Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago