bpucker / MYB_annotator
This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
☆17Updated 7 months ago
Alternatives and similar repositories for MYB_annotator:
Users that are interested in MYB_annotator are comparing it to the libraries listed below
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated 9 months ago
- ☆16Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- parallelLastz: Running Lastz in parallel☆15Updated 5 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- ☆23Updated last year
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆13Updated this week
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- Domain based annotation of transposable elements☆19Updated 2 weeks ago
- The MafFilter genome alignment processor☆17Updated 4 months ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- SINE annotation tool for plant genomes☆17Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- ☆14Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 8 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- ☆15Updated last year
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 4 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 4 months ago