greenelab / GCB535Links
Materials for GCB535 at Penn.
☆20Updated 6 years ago
Alternatives and similar repositories for GCB535
Users that are interested in GCB535 are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 7 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 8 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Course materials for the edX Data Analysis for Genomics☆36Updated 10 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 6 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 10 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- ☆25Updated 4 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 6 years ago
- ☆35Updated 9 years ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 8 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 8 months ago