Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage inference
☆11Aug 4, 2017Updated 8 years ago
Alternatives and similar repositories for bioc2017singlecell
Users that are interested in bioc2017singlecell are comparing it to the libraries listed below
Sorting:
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Mar 15, 2023Updated 2 years ago
- ☆12Jul 13, 2018Updated 7 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Mar 10, 2022Updated 3 years ago
- PTa Analysis TOolkit☆14Updated this week
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Sep 18, 2023Updated 2 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Dec 15, 2020Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 7 months ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- ☆23Jul 31, 2018Updated 7 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆26Mar 15, 2023Updated 2 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 2 years ago
- Reproducible Workflows, curated at the Fred Hutch☆12Jan 21, 2026Updated last month
- ☆56Dec 13, 2020Updated 5 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Mar 15, 2023Updated 2 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- ☆64Mar 18, 2025Updated 11 months ago
- Helper script for bioconductor/bioconductor_docker☆13Feb 26, 2026Updated last week
- ☆13Jun 24, 2016Updated 9 years ago
- Toolkit for Single-Cell Velocity☆59Jul 8, 2025Updated 7 months ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 2 years ago
- A container (S4 class) for matrix-like assays☆36Feb 5, 2026Updated 3 weeks ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆71Apr 12, 2024Updated last year
- Course material for introductory R / Bioconductor courses☆44Mar 15, 2023Updated 2 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms☆18Dec 15, 2021Updated 4 years ago
- Bioconductor package for management of multi-assay data☆73Nov 17, 2025Updated 3 months ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Jan 22, 2026Updated last month
- ☆17Jul 29, 2021Updated 4 years ago
- Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer☆19Aug 18, 2023Updated 2 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago