theislab / destiny
R package for single cell and other data analysis using diffusion maps
☆77Updated last week
Related projects ⓘ
Alternatives and complementary repositories for destiny
- Cell type pipes for R☆51Updated 9 months ago
- ☆53Updated 3 years ago
- Normalize CITEseq Data☆63Updated 5 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆89Updated this week
- Linear trajectory inference for single-cell RNA-seq☆58Updated 7 months ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆79Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆89Updated 11 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆88Updated 8 months ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆40Updated 2 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆89Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆64Updated 7 months ago
- From geospatial to spatial -omics☆79Updated this week
- Latent Embedding Multivariate Regression☆82Updated this week
- Framework for sensitive DE testing (using neighbourhoods)☆59Updated 4 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆129Updated 8 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆158Updated 3 months ago
- R package for semi-supervised single-cell data integration☆75Updated 9 months ago
- ☆55Updated 2 months ago
- Pan-Cancer Single Cell Classifier☆61Updated 5 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆73Updated 6 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆100Updated last year