R package for single cell and other data analysis using diffusion maps
☆114Oct 21, 2026Updated last week
Alternatives and similar repositories for destiny
Users that are interested in destiny are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆319Jun 17, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 8 months ago
- Spatial omics analysis toolbox☆394Updated this week
- RNA Velocity generalized through dynamical modeling☆514Feb 25, 2026Updated 8 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆185Dec 8, 2022Updated 3 years ago
- ☆167Mar 20, 2026Updated 7 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆683Oct 23, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆491Jan 22, 2026Updated 9 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆186Jun 10, 2024Updated 2 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆216Dec 10, 2025Updated 10 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆491Jun 6, 2025Updated last year
- R package for Pathway RespOnsive GENe activity inference☆130Jan 30, 2023Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆233Jul 2, 2026Updated 3 months ago
- CellRank: dynamics from multi-view single-cell data☆459Oct 14, 2026Updated 2 weeks ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆254Apr 3, 2026Updated 6 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆269Jan 16, 2026Updated 9 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- Quantifying metabolism activity at the single-cell resolution☆201Aug 20, 2026Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆261Jun 28, 2026Updated 4 months ago
- ☆314Jun 16, 2026Updated 4 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Oct 15, 2026Updated 2 weeks ago
- R package to infer biological activities from omics data using a collection of methods.☆313Dec 16, 2025Updated 10 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆101Nov 24, 2020Updated 5 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆266Oct 17, 2025Updated last year