drisso / bioc2016singlecellLinks
Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
☆80Updated 9 years ago
Alternatives and similar repositories for bioc2016singlecell
Users that are interested in bioc2016singlecell are comparing it to the libraries listed below
Sorting:
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- An R interface to enrichR☆93Updated 9 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆116Updated 4 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- ☆69Updated 7 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 7 months ago
- Clone of the Bioconductor repository for the scater package.☆96Updated 8 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆137Updated last year
- ☆142Updated 7 years ago
- published papers with a lot of data☆74Updated 7 months ago
- Batch effects and the effective design of single-cell gene expression studies☆104Updated 6 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆124Updated this week
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆99Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- Immunology-related bioinformatics data and tools☆75Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- R package for analyzing single-cell RNA-seq data☆176Updated last year
- Tools for single-cell data processing☆127Updated last year