drisso / bioc2016singlecellLinks
Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
☆80Updated 9 years ago
Alternatives and similar repositories for bioc2016singlecell
Users that are interested in bioc2016singlecell are comparing it to the libraries listed below
Sorting:
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 9 years ago
- An R interface to enrichR☆94Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆99Updated last year
- Clone of the Bioconductor repository for the scater package.☆95Updated 3 weeks ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated 2 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆132Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 5 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆119Updated 6 months ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Batch effects and the effective design of single-cell gene expression studies☆104Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆100Updated 4 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- R package for analyzing single-cell RNA-seq data☆179Updated last year
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- ☆118Updated 7 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- published papers with a lot of data☆74Updated 10 months ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆45Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Updated 7 months ago
- Mouse cell atlas☆61Updated 5 years ago
- ☆69Updated 7 years ago