drisso / bioc2016singlecellLinks
Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
☆80Updated 9 years ago
Alternatives and similar repositories for bioc2016singlecell
Users that are interested in bioc2016singlecell are comparing it to the libraries listed below
Sorting:
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 9 years ago
- An R interface to enrichR☆93Updated 11 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆118Updated 6 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated 2 years ago
- ☆143Updated 7 years ago
- Clone of the Bioconductor repository for the scater package.☆96Updated this week
- Clone of the Bioconductor repository for the DropletUtils package.☆64Updated 4 months ago
- ☆55Updated 10 months ago
- published papers with a lot of data☆74Updated 9 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- RNA-seq data analysis practical☆61Updated 11 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- R package for analyzing single-cell RNA-seq data☆179Updated last year
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Updated 2 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Updated 8 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆131Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- ☆69Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago