High-performance sparse data representation and manipulation in R
☆11Dec 16, 2025Updated 2 months ago
Alternatives and similar repositories for SparseArray
Users that are interested in SparseArray are comparing it to the libraries listed below
Sorting:
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Oct 30, 2025Updated 3 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- The Bioconductor Build System☆12Feb 6, 2026Updated 3 weeks ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- ☆10Jul 29, 2020Updated 5 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Oct 17, 2018Updated 7 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- ☆13Mar 31, 2025Updated 10 months ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 26, 2024Updated last year
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆46Dec 15, 2025Updated 2 months ago
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- Read RDS files, in Python☆26Updated this week
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 9 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Oct 15, 2024Updated last year
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21May 22, 2023Updated 2 years ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 3 months ago
- Automate package and project setup for Bioconductor packages☆54Mar 21, 2025Updated 11 months ago
- Foundation of integer range manipulation in Bioconductor☆23Oct 30, 2025Updated 3 months ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Feb 3, 2026Updated 3 weeks ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…☆40Mar 23, 2023Updated 2 years ago
- ☆27Mar 18, 2022Updated 3 years ago
- ☆22Oct 6, 2023Updated 2 years ago
- A unified framework for working transparently with on-disk and in-memory array-like datasets☆28Oct 30, 2025Updated 3 months ago
- spmoran: An R package for spatial/spatio-temporal regression modeling☆27Oct 15, 2024Updated last year
- 🌐 R package: Identify Global Objects in R Expressions☆29Feb 2, 2026Updated 3 weeks ago
- Clone identification from single-cell data☆62Nov 10, 2022Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Sep 9, 2021Updated 4 years ago
- Differential expression and allelic analysis, nonparametric statistics☆30Jan 3, 2025Updated last year
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆26Mar 15, 2023Updated 2 years ago
- A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and …☆32Jul 25, 2023Updated 2 years ago
- Utilities for manipulating chromosome names, including modifying them to follow a particular naming style☆33Dec 4, 2025Updated 2 months ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Jun 17, 2025Updated 8 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 7 months ago