A python command line tool to generate modbed files for visualization on WashU Epigenome Browser
☆11Aug 7, 2026Updated this week
Alternatives and similar repositories for modbedtools
Users that are interested in modbedtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline for calling modifications in nanopore reads.☆16Jul 7, 2026Updated last month
- GitHub Action to Sync subtrees with a source project☆11Oct 16, 2019Updated 6 years ago
- Tools for fiberseq data written in rust.☆69Jul 21, 2026Updated 2 weeks ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Jun 16, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆18Jan 16, 2023Updated 3 years ago
- ☆13Nov 16, 2018Updated 7 years ago
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 4 years ago
- SpeakingAI is a demo of privately deployable 'GPT-4o like AI + RAG', a fully functional web AI server with audio query/answer in streamin…☆12Aug 23, 2024Updated last year
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆62Jul 21, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Workflow to identify the centromere dip regions (CDR) from methyl BAMs☆16Jun 4, 2025Updated last year
- R package for estimating and visualizing multilevel propensity score models.☆16Nov 17, 2025Updated 8 months ago
- ☆53Sep 27, 2025Updated 10 months ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- Tools for working with Variant Call Format files.☆11Jul 2, 2026Updated last month
- ☆11Feb 20, 2024Updated 2 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Tools for plotting methylation data in various ways☆196Jun 13, 2026Updated last month
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- ☆14Jul 30, 2026Updated last week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- Sturgeon is a CNS neural network classifier☆51May 11, 2026Updated 2 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Sep 5, 2024Updated last year
- aoe driver for Linux with backward compatibility build system☆26Feb 1, 2026Updated 6 months ago
- Quantitative proteomics workflow☆16Sep 30, 2022Updated 3 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆26Dec 26, 2022Updated 3 years ago