A python command line tool to generate modbed files for visualization on WashU Epigenome Browser
☆11Dec 10, 2025Updated 4 months ago
Alternatives and similar repositories for modbedtools
Users that are interested in modbedtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GitHub Action to Sync subtrees with a source project☆11Oct 16, 2019Updated 6 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Apr 1, 2026Updated last week
- Tools for fiberseq data written in rust.☆65Mar 18, 2026Updated 3 weeks ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image☆16Jan 16, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆13Nov 16, 2018Updated 7 years ago
- ☆20Nov 21, 2025Updated 4 months ago
- Set of tools to manipulate and visualize modified base bam files☆59Aug 2, 2022Updated 3 years ago
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Centromere mapping and annotation pipeline☆23Feb 28, 2026Updated last month
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SpeakingAI is a demo of privately deployable 'GPT-4o like AI + RAG', a fully functional web AI server with audio query/answer in streamin…☆12Aug 23, 2024Updated last year
- R package for estimating and visualizing multilevel propensity score models.☆16Nov 17, 2025Updated 4 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Mar 5, 2025Updated last year
- ☆52Sep 27, 2025Updated 6 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Mar 28, 2026Updated last week
- ☆35Mar 24, 2026Updated 2 weeks ago
- A GitHub action to install Nextflow☆29Updated this week
- ☆11Feb 20, 2024Updated 2 years ago
- Tools for working with Variant Call Format files.☆12Jan 22, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 10 months ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Tools for plotting methylation data in various ways☆182Mar 24, 2026Updated 2 weeks ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆13Mar 20, 2026Updated 3 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Sturgeon is a CNS neural network classifier☆46Jan 22, 2026Updated 2 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Sep 5, 2024Updated last year
- aoe driver for Linux with backward compatibility build system☆26Feb 1, 2026Updated 2 months ago