A python command line tool to generate modbed files for visualization on WashU Epigenome Browser
☆11Dec 10, 2025Updated 2 months ago
Alternatives and similar repositories for modbedtools
Users that are interested in modbedtools are comparing it to the libraries listed below
Sorting:
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated 11 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- ☆13Feb 18, 2026Updated last week
- ☆11Feb 20, 2024Updated 2 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- Galaxy Docker Image with Tools for Genome Annotation☆12Apr 20, 2021Updated 4 years ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 2 years ago
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- Centromere mapping and annotation pipeline☆22Feb 13, 2026Updated 2 weeks ago
- ☆17Feb 20, 2026Updated last week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 8 months ago
- JBrowse plugin for methylation related things☆16Oct 9, 2018Updated 7 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆19Feb 16, 2026Updated last week
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- structure detection program☆18Nov 20, 2024Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆20Feb 21, 2026Updated last week
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated 2 weeks ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Updated this week
- Suite of tools for pangenomics built using vg☆25Jul 18, 2025Updated 7 months ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Nov 12, 2025Updated 3 months ago
- ☆23Sep 9, 2025Updated 5 months ago
- ☆27Apr 17, 2025Updated 10 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 7 months ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago