PengNi / deepsignal2
☆27Updated last year
Related projects ⓘ
Alternatives and complementary repositories for deepsignal2
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆14Updated 4 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Updated 6 months ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 7 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆20Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆47Updated last year
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 5 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆17Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆33Updated 3 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆14Updated 5 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated 3 weeks ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆35Updated 3 months ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆36Updated 2 years ago
- ☆19Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆27Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated last year
- ☆34Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 3 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 7 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 2 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆57Updated 4 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆17Updated last year