PengNi / deepsignal2Links
☆29Updated last year
Alternatives and similar repositories for deepsignal2
Users that are interested in deepsignal2 are comparing it to the libraries listed below
Sorting:
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated last month
- ☆33Updated last year
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆61Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 8 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 5 months ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- ☆33Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆29Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆53Updated 5 months ago
- ☆23Updated 2 years ago
- ☆36Updated 2 years ago
- Scoring GT/AG sites for improving spliced alignment☆45Updated 3 weeks ago