☆18Oct 7, 2024Updated last year
Alternatives and similar repositories for ICTV-TaxonomyChallenge
Users that are interested in ICTV-TaxonomyChallenge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 7 months ago
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated 4 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Updated this week
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆16Jan 28, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated last month
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Updated this week
- Methods to determine sequence element (unitig) presence/absence☆27Mar 6, 2026Updated 4 months ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Prediction of virus-host association using protein language models and multiple instance learning☆23Jun 13, 2024Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated last month
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated 2 weeks ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- ☆23Updated this week
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 5 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆28Feb 6, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆16Jun 16, 2026Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated 2 weeks ago
- ☆17May 26, 2022Updated 4 years ago
- plane sweep filtering genome alignments☆24Updated this week
- Catalogue of pairwise alignment algorithms and benchmarks☆26Jan 6, 2026Updated 6 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week