☆17Oct 7, 2024Updated last year
Alternatives and similar repositories for ICTV-TaxonomyChallenge
Users that are interested in ICTV-TaxonomyChallenge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Methods to determine sequence element (unitig) presence/absence☆24Mar 6, 2026Updated last month
- Model for taxonomy classification☆16May 28, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated 3 weeks ago
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆11Mar 27, 2026Updated 2 weeks ago
- Reference-guided multiple sequence alignment of viral genomes☆71Nov 6, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆38Oct 29, 2024Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- Fast approximate string searching☆115Apr 8, 2026Updated last week
- Prediction of virus-host association using protein language models and multiple instance learning☆22Jun 13, 2024Updated last year
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- Plasmid analysis using rearrangement distances☆50Apr 8, 2026Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 11 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 8 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆29Jul 18, 2025Updated 8 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 2 months ago
- ☆23Sep 9, 2025Updated 7 months ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆25Feb 6, 2023Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month
- ☆17May 26, 2022Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- plane sweep filtering genome alignments☆23Mar 30, 2026Updated 2 weeks ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆50Mar 26, 2026Updated 3 weeks ago
- A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)☆14Aug 31, 2016Updated 9 years ago