ICTV-VBEG / ICTV-TaxonomyChallengeLinks
☆17Updated 10 months ago
Alternatives and similar repositories for ICTV-TaxonomyChallenge
Users that are interested in ICTV-TaxonomyChallenge are comparing it to the libraries listed below
Sorting:
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Chimera: A Versatile Metagenomic Classification Tool☆19Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 7 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 9 months ago
- ☆10Updated 2 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- Genome size estimation from long read overlaps☆59Updated last week
- ☆12Updated 8 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated this week
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Remove human reads from a sequencing run☆40Updated last month
- ☆44Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 6 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆27Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆41Updated last week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Plasmid analysis using rearrangement distances☆45Updated 3 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆28Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆79Updated last month
- A novel method for sequence similarity estimation☆28Updated last year