xmuyulab / SnipeLinks
Highly sensitive pathogen detection
☆12Updated 5 years ago
Alternatives and similar repositories for Snipe
Users that are interested in Snipe are comparing it to the libraries listed below
Sorting:
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆24Updated 3 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Updated 4 years ago
- transposable element typing pipeline☆19Updated last year
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- ☆30Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago