Highly sensitive pathogen detection
☆12Oct 5, 2020Updated 6 years ago
Alternatives and similar repositories for Snipe
Users that are interested in Snipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 5 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus☆12May 21, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆45Apr 8, 2024Updated 2 years ago
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 3 years ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Oct 23, 2026Updated last week
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- ☆15Jul 7, 2024Updated 2 years ago
- ☆16Jun 30, 2021Updated 5 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- ☆33Apr 25, 2022Updated 4 years ago
- Download files from NCBI Entrez by accession☆133Sep 3, 2024Updated 2 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆106Sep 17, 2022Updated 4 years ago
- Make coverage plots from bam files!☆16Mar 17, 2026Updated 7 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Microbiome classification pipeline☆67Sep 29, 2026Updated last month
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 8 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Updated this week
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 7 months ago