Highly sensitive pathogen detection
☆12Oct 5, 2020Updated 5 years ago
Alternatives and similar repositories for Snipe
Users that are interested in Snipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 3 months ago
- ☆15Jun 30, 2021Updated 5 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆45Apr 8, 2024Updated 2 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Jun 4, 2026Updated 2 months ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Jan 29, 2023Updated 3 years ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆107Sep 17, 2022Updated 3 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated last week
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 2 months ago
- Microbiome classification pipeline☆67May 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Make coverage plots from bam files!☆15Mar 17, 2026Updated 4 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Jun 22, 2019Updated 7 years ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 6 months ago
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Pan-Genomic Matching Statistics☆58Apr 3, 2024Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 5 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆21Jun 24, 2026Updated last month
- Detection of viruses from RNA-Seq on human samples☆46Mar 18, 2023Updated 3 years ago
- deduplicate FASTA and FASTQ files☆23Feb 16, 2022Updated 4 years ago
- Long-read metagenomic analysis☆112Oct 10, 2023Updated 2 years ago
- Run cBioPortal using Docker Compose☆23Jul 31, 2026Updated last week