xmuyulab / Snipe
Highly sensitive pathogen detection
☆12Updated 4 years ago
Alternatives and similar repositories for Snipe:
Users that are interested in Snipe are comparing it to the libraries listed below
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- ☆15Updated 7 years ago
- transposable element typing pipeline☆17Updated last year
- De novo VIral Genome Annotator☆21Updated 6 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆20Updated 9 months ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆12Updated 3 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆37Updated 5 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated last month
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13Updated 9 months ago
- ☆16Updated 6 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Metagenomics microbial abundance quantification☆27Updated 2 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 3 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- ☆13Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago