Alternatives and similar repositories for pyasr

Users that are interested in pyasr are comparing it to the libraries listed below

• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆25Updated 2 weeks ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆42Updated last year
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆18Updated last year
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆27Updated 2 years ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆23Updated 8 months ago
• MoseleyBioinformaticsLab / kegg_pull
  Package that facilitates pulling database entries from KEGG via its REST API
  ☆11Updated 2 years ago
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated last month
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated last month
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated 2 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆14Updated last year
• nf-core / proteinfamilies
  Generation and updating of protein families
  ☆21Updated last month
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆30Updated 9 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆37Updated 2 weeks ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 3 months ago
• ablab / nerpa
  ☆17Updated 9 months ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆17Updated last year
• bodenlab / GRASP
  Graphical Representation of Ancestral Sequence Predictions
  ☆12Updated 2 years ago
• issararab / EPSAPG
  EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
  ☆11Updated last year
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 3 years ago
• althonos / gb-io.py
  A Python interface to gb-io, a fast GenBank parser written in Rust.
  ☆23Updated 2 months ago
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆13Updated 2 years ago
• JoanaMPereira / GCsnap
  GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts
  ☆34Updated last year
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆76Updated last week
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated last year
• Edinburgh-Genome-Foundry / Sequeduct
  Sequencing analysis pipeline
  ☆14Updated last month
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆16Updated 4 years ago
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated 4 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆63Updated 5 years ago