ErasmusMC-Bioinformatics / WeFaceNanoLinks
Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
☆12Updated 4 years ago
Alternatives and similar repositories for WeFaceNano
Users that are interested in WeFaceNano are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆20Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Find Unique genomic Regions☆30Updated 3 months ago
- De novo VIral Genome Annotator☆21Updated 9 months ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- transposable element typing pipeline☆18Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆11Updated last year
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆15Updated 7 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- Read contamination removal☆25Updated last year
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- comparative genome dot plot viewer☆9Updated 6 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 4 months ago