ErasmusMC-Bioinformatics / WeFaceNano
Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
☆12Updated 3 years ago
Alternatives and similar repositories for WeFaceNano:
Users that are interested in WeFaceNano are comparing it to the libraries listed below
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated 9 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Find Unique genomic Regions☆29Updated last month
- De novo VIral Genome Annotator☆21Updated 5 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- transposable element typing pipeline☆17Updated 11 months ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Read contamination removal☆24Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆10Updated this week
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 3 months ago
- ☆19Updated last year
- Remove human reads from a sequencing run☆37Updated 5 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 11 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago