Simple tool to verticalize text delimited files.
☆37May 6, 2024Updated last year
Alternatives and similar repositories for verticalize
Users that are interested in verticalize are comparing it to the libraries listed below
Sorting:
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- A small, auxiliary index to massively improve parallel fastq parsing☆31Feb 12, 2026Updated 2 weeks ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- Visualization tool for (meta)genome assembly graphs☆25Updated this week
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Ancestral Sequence Reconstruction in Python☆14May 9, 2019Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Dec 27, 2022Updated 3 years ago
- Identify Organisms from a Stream of DNA Sequences☆13Mar 3, 2016Updated 9 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Convert sequence IDs between ucsc/refseq/genbank☆16Aug 28, 2018Updated 7 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 7 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 5 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Locating genetic regions that are "just right"☆17Oct 26, 2016Updated 9 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- Text Only Genome Viewer!☆233Updated this week
- ☆21Dec 26, 2025Updated 2 months ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆68Jul 26, 2017Updated 8 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆23Feb 22, 2023Updated 3 years ago