lindenb / verticalize
Simple tool to verticalize text delimited files.
☆36Updated last year
Alternatives and similar repositories for verticalize:
Users that are interested in verticalize are comparing it to the libraries listed below
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- reference free variant assembly☆33Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- Library of snakemake rules.☆12Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- Fast and accurate sequence demultiplexing☆27Updated 3 months ago
- ☆30Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 6 months ago
- ☆26Updated 2 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 9 months ago
- The command-line interface to GGD☆42Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆19Updated 8 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- Mapped QC analysis program☆44Updated 6 years ago
- Tools for bam file processing☆55Updated 10 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago