Detect contigs of complete circular genomes
☆23Jun 6, 2019Updated 6 years ago
Alternatives and similar repositories for ccontigs
Users that are interested in ccontigs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated 2 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 2 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36May 18, 2026Updated last week
- ☆27Jan 30, 2025Updated last year
- ☆26Jun 20, 2023Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆19Apr 24, 2026Updated last month
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆17May 22, 2023Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- ☆87Updated this week
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated last year
- Genome size estimation from long read overlaps☆89May 1, 2026Updated 3 weeks ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆49Feb 20, 2026Updated 3 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 3 months ago