Detect contigs of complete circular genomes
☆23Jun 6, 2019Updated 6 years ago
Alternatives and similar repositories for ccontigs
Users that are interested in ccontigs are comparing it to the libraries listed below
Sorting:
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Updated this week
- Bitpacked sequence trait and implementation☆16Updated this week
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆39Updated this week
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated 10 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Nov 17, 2025Updated 3 months ago
- Ancestral Sequence Reconstruction in Python☆14May 9, 2019Updated 6 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- ☆82Nov 27, 2025Updated 3 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- Genome size estimation from long read overlaps☆81Updated this week
- ☆26Jan 30, 2025Updated last year
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated last year
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- ☆16May 22, 2023Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated 11 months ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago