Microbiology / ccontigsLinks
Detect contigs of complete circular genomes
☆23Updated 6 years ago
Alternatives and similar repositories for ccontigs
Users that are interested in ccontigs are comparing it to the libraries listed below
Sorting:
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- ☆21Updated 4 months ago
- MAG Circularization Method☆33Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- ☆22Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 7 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Colinear block visualisation tool☆31Updated last year
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- ☆21Updated 4 months ago
- ☆16Updated 4 years ago
- Bacterial GWAS analysis☆40Updated last week
- Prophage Activity Estimator☆26Updated last year
- strain-level analysis tools☆37Updated 7 months ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 2 months ago