Microbiology / ccontigsLinks
Detect contigs of complete circular genomes
☆23Updated 6 years ago
Alternatives and similar repositories for ccontigs
Users that are interested in ccontigs are comparing it to the libraries listed below
Sorting:
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 10 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- ☆22Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- ☆24Updated 11 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 8 months ago
- Annotate your metagenome assemblies☆11Updated 7 years ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Updated 7 years ago
- ☆28Updated 2 weeks ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- strain-level analysis tools☆39Updated last year
- Neptune: Genomic Signature Discovery☆20Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆32Updated 2 weeks ago
- Colinear block visualisation tool☆31Updated last year