ekg / glia
a string to graph aligner
☆41Updated 8 years ago
Alternatives and similar repositories for glia:
Users that are interested in glia are comparing it to the libraries listed below
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆26Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- ☆35Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- Aligner for sequencing data☆21Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 3 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago