Run-length compressed BWT with LZ77 sampled suffix array
☆10Apr 25, 2022Updated 4 years ago
Alternatives and similar repositories for lz-rlbwt
Users that are interested in lz-rlbwt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 4 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 8 years ago
- Lightweight String Graph Construction☆11May 10, 2023Updated 3 years ago
- A tool for merging large BWTs☆23Nov 26, 2020Updated 5 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆16May 4, 2016Updated 10 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆72May 31, 2023Updated 3 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated last year
- BWT-based index for graphs☆72Aug 19, 2026Updated 2 months ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dynamic succinct/compressed data structures☆120Dec 17, 2025Updated 10 months ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- A C++ container-like data structure for storing a vector of bits with fast appending on both sides and fast insertion in the middle, all …☆27Apr 26, 2022Updated 4 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆19May 21, 2017Updated 9 years ago
- Library for constructing pinch graphs and cactus graphs☆11May 7, 2024Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Finding all the circuits of a directed graph with self-arcs and multiple-arcs by K.A. Hawick and H.A. James☆19Apr 11, 2013Updated 13 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- C++ wrapper to tabix indexer☆18Jun 27, 2025Updated last year
- Wavelet tree based on a fixed block boosting technique☆17May 18, 2021Updated 5 years ago
- External memory suffix array construction using inducing☆12Jul 27, 2020Updated 6 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 6 months ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆12Feb 16, 2019Updated 7 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 14 years ago
- Parallel Wavelet Tree and Wavelet Matrix Construction☆26Jun 27, 2023Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Nov 27, 2025Updated 11 months ago
- eSAIS and DC3 with LCP construction☆12Jan 25, 2021Updated 5 years ago
- Implementation of an algorithm to find all the elementary circuits in a directed (multi)graph.☆10Aug 16, 2013Updated 13 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago